Evidence map›Paper›PMID 23401343›Full record

ArticleChembiochem : a European journal of chemical biology2013

Computationally designed peptide inhibitors of the ubiquitin E3 ligase SCF(Fbx4).

Junglim Lee, Deanne W Sammond, Zeno Fiorini, Jonel P Saludes, Michael G Resch, Bing Hao, Wei Wang, Hang Yin, Xuedong Liu

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Junglim LeeDepartment of Chemistry and Biochemistry, 596 UCB, University of Colorado, JSCBB 3415 Colorado Avenue, Boulder, CO 80309-0215, USA.
Deanne W Sammond
Zeno Fiorini
Jonel P Saludes
Michael G Resch
Bing Hao
Wei Wang
Hang Yin
Xuedong Liu

Funding

Mechanisms of p27Kipl Proteolysis in Cancer CellsR01CA107098 · NCI · UNIVERSITY OF COLORADO AT BOULDER · PI LIU, XUEDONG · 2004 to 2012
$2.7M
Structural studies of substrate recognition and specificity by the SCF ubiquitinR01GM099948 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI HAO, BING · 2012 to 2016
$1.4M
NCI NIH HHS CA107089NCI NIH HHS R01 CA107098NIGMS NIH HHS GM099948NIGMS NIH HHS R01 GM099948
6 · The paper itself

Abstract

A structure-based computational approach was used to rationally design peptide inhibitors that can target an E3 ligase (SCF(Fbx4) )-substrate (TRF1) interface and subsequent ubiquitylation. Characterization of the inhibitors demonstrates that our sequence-optimization protocol results in an increase in peptide-TRF1 affinity without compromising peptide-protein specificity.

Indexed as

Amino Acid SequenceDrug DesignF-Box ProteinsHumansModels, MolecularMolecular Sequence DataMutationPeptidesProtein BindingProtein Interaction MapsTelomeric Repeat Binding Protein 1UbiquitinationF-Box ProteinsFBXO4 protein, humanPeptidesTelomeric Repeat Binding Protein 1

Identifiers

PMID23401343
PMCPMC4028150

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.