Evidence map›Paper›PMID 23401214›Full record

ArticleMagnetic resonance in medicine2014

Principal component analysis enhances SNR for dynamic electron paramagnetic resonance oxygen imaging of cycling hypoxia in vivo.

Gage Redler, Boris Epel, Howard J Halpern

Abstract read
In one paragraph

Article in Magnetic resonance in medicine, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 31 citations in OpenAlex.

  1. The Challenges of OInternational journal of molecular sciences · 2022
    Review
  2. Review
  3. EPR Everywhere.Applied magnetic resonance · 2021
    Review
  4. Review
  5. Review
  6. Article
  7. Fractalkine/CX3CL1 in Neoplastic Processes.International journal of molecular sciences · 2020
    Review
  8. Article
  9. Review
  10. Fast dynamic electron paramagnetic resonance (EPR) oxygen imaging using low-rank tensors.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2016
    Article
  11. Maximally spaced projection sequencing in electron paramagnetic resonance imaging.Concepts in magnetic resonance. Part B, Magnetic resonance engineering · 2015
    Article
  12. Real-Time Image Reconstruction for Pulse EPR Oxygen Imaging Using a GPU and Lookup Table Parameter Fitting.Concepts in magnetic resonance. Part B, Magnetic resonance engineering · 2015
    Article
  13. Implementation of GPU-accelerated back projection for EPR imaging.Journal of X-ray science and technology · 2015
    Article
  14. Article
  15. Article
  16. Article
  17. EPR image based oxygen movies for transient hypoxia.Advances in experimental medicine and biology · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Gage RedlerDepartment of Radiation and Cellular Oncology, University of Chicago, Chicago, Illinois, USA.
Boris Epel
Howard J Halpern
University of Chicago · US

Funding

Very Low Frequency EPR Imaging in Vivo Phisiology P41 EB02034P41EB002034 · NIBIB · UNIVERSITY OF CHICAGO · PI HALPERN, HOWARD J · 2003 to 2017
$16.1M
Radiation Biology of EPR Oxygen ImagesR01CA098575 · NCI · UNIVERSITY OF CHICAGO · PI HALPERN, HOWARD J · 2003 to 2022
$4.5M
NCI NIH HHS R01 CA098575NCI NIH HHS R01 CA98575NIBIB NIH HHS P41 EB002034
6 · The paper itself

Abstract

purposeLow oxygen concentration (hypoxia) in tumors strongly affects their malignant state and resistance to therapy. These effects may be more deleterious in regions undergoing cycling hypoxia. Electron paramagnetic resonance imaging (EPRI) has provided a noninvasive, quantitative imaging modality to investigate static pO2 in vivo. However, to image changing hypoxia, EPRI images with better temporal resolution may be required. The tradeoff between temporal resolution and signal-to-noise ratio (SNR) results in lower SNR for EPRI images with imaging time short enough to resolve cycling hypoxia.

methodsPrincipal component analysis allows for accelerated image acquisition with acceptable SNR by filtering noise in projection data, from which pO2 images are reconstructed. Principal component analysis is used as a denoising technique by including only low-order components to approximate the EPRI projection data.

resultsSimulated and experimental studies show that principal component analysis filtering increases SNR, particularly for small numbers of sub-volumes with changing pO2 , enabling an order of magnitude increase in temporal resolution with minimal deterioration in spatial resolution or image quality.

conclusionThe SNR necessary for dynamic EPRI studies with temporal resolution required to investigate cycling hypoxia and its physiological implications is enabled by principal component analysis filtering.

Indexed as

AlgorithmsAnimalsCell HypoxiaCell Line, TumorData Interpretation, StatisticalElectron Spin Resonance SpectroscopyFemaleHumansMammary Neoplasms, ExperimentalMiceMice, Inbred C3HMolecular ImagingOximetryOxygenPrincipal Component AnalysisReproducibility of ResultsOxygendynamicEPRoxygen imagingprincipal component analysisSNRspin probe

Identifiers

PMID23401214
PMCPMC3796058
OpenAlexW2115561184

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.