Evidence map›Paper›PMID 23400093›Full record

ReviewNature reviews. Genetics2013

DNA methylation: roles in mammalian development.

Zachary D Smith, Alexander Meissner

2 registry-linked trialsAbstract readReview
PubMed Publisher
In one paragraph

Review in Nature reviews. Genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 2 registered trials, which are not on this map. Cited by 1,612 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1,612citing papers in PubMed, 2 pooled it
102.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03642574 nacompletednot on this mapstarted 2018, after this paper: background citation

Cumulative Live Birth Rate With eSET After Preimplantation DNA Methylation Test (PIMT) in ART

TypeinterventionalSponsorChen Zi-JiangRan2018 to 2022Enrolled182ConditionsDNA MethylationArmsCNV
NCT05442125 naunknown statusnot on this mapstarted 2022, after this paper: background citation

Whether Using DNA Methylome to Select Embryos Can Increase the Live Birth Rate During Assisted Reproductive Technology: A Multicenter, Randomized , Open-label Clinical Trial.

TypeinterventionalSponsorShandong UniversityRan2022 to 2025Enrolled1,146ConditionsReproductive Techniques, Assisted, DNA MethylationArmsUsing DNA methylome to select embryos, Using morphologic score to select embryos
3 · Its place in the literature

Who cites it

1,612 citing papers in PubMed, 2 syntheses or guidelines pooled it, 3,066 citations in OpenAlex.

  1. Pooled it
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  10. Epigenetic regulation of kidney development.Nature reviews. Nephrology · 2026
    Review
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  18. Multidomain interaction governs the filamentous assembly of the dominant-negative DNMT3A R882H mutant.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  19. Review
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1,552 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Zachary D SmithDepartment of Stem Cell and Regenerative Biology, Harvard University, Cambridge, Massachusetts 02138, USA.
Alexander Meissner
Harvard Stem Cell Institute · USHarvard University · US

Funding

Regulatory Roles and Dynamics of Nuclear long-noncoding RNAs in PluripotencyP01GM099117 · NIGMS · HARVARD UNIVERSITY · PI MEISSNER, ALEXANDER · 2011 to 2021
$21.2M
Production sequencing of reference human epigenomesU01ES017155 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BERNSTEIN, BRADLEY EVAN, MEISSNER, ALEXANDER · 2008 to 2012
$15.4M
NIEHS NIH HHS U01ES017155NIGMS NIH HHS P01GM099117
6 · The paper itself

Abstract

DNA methylation is among the best studied epigenetic modifications and is essential to mammalian development. Although the methylation status of most CpG dinucleotides in the genome is stably propagated through mitosis, improvements to methods for measuring methylation have identified numerous regions in which it is dynamically regulated. In this Review, we discuss key concepts in the function of DNA methylation in mammals, stemming from more than two decades of research, including many recent studies that have elucidated when and where DNA methylation has a regulatory role in the genome. We include insights from early development, embryonic stem cells and adult lineages, particularly haematopoiesis, to highlight the general features of this modification as it participates in both global and localized epigenetic regulation.

Indexed as

DNA MethylationAnimalsCell DifferentiationCpG IslandsEmbryonic Stem CellsEpigenesis, GeneticGene Expression RegulationGene Expression Regulation, DevelopmentalGenomic ImprintingGerm CellsHematopoiesisHumansMammals

Identifiers

PMID23400093
OpenAlexW1987557775

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.