ArticleJournal of biomedical semantics2013
The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.
Article in Journal of biomedical semantics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
- BioHackathon 2015: Semantics of data for life sciences and reproducible research.F1000Research · 2020Article
- NBDC RDF portal: a comprehensive repository for semantic data in life sciences.Database : the journal of biological databases and curation · 2018Article
- Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures.Nucleic acids research · 2017Article
- SSBD: a database of quantitative data of spatiotemporal dynamics of biological phenomena.Bioinformatics (Oxford, England) · 2016Article
- FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation.Journal of biomedical semantics · 2016Article
- A Querying Method over RDF-ized Health Level Seven v2.5 Messages Using Life Science Knowledge Resources.JMIR medical informatics · 2016Article
- Bioinformatics Mining and Modeling Methods for the Identification of Disease Mechanisms in Neurodegenerative Disorders.International journal of molecular sciences · 2015Review
- Construction of an ortholog database using the semantic web technology for integrative analysis of genomic data.PloS one · 2015Article
- The EBI RDF platform: linked open data for the life sciences.Bioinformatics (Oxford, England) · 2014Article
- BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.Journal of biomedical semantics · 2014Article
- G-Links: a gene-centric link acquisition service.F1000Research · 2014Article
- Enriched biodiversity data as a resource and service.Biodiversity data journal · 2014Article
- BioBenchmark Toyama 2012: an evaluation of the performance of triple stores on biological data.Journal of biomedical semantics · 2014Article
- Community-driven development for computational biology at Sprints, Hackathons and Codefests.BMC bioinformatics · 2014Article
- CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes.Nucleic acids research · 2014Article
Corrections and comments
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Authors and funding
66 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundBioHackathon 2010 was the third in a series of meetings hosted by the Database Center for Life Sciences (DBCLS) in Tokyo, Japan. The overall goal of the BioHackathon series is to improve the quality and accessibility of life science research data on the Web by bringing together representatives from public databases, analytical tool providers, and cyber-infrastructure researchers to jointly tackle important challenges in the area of in silico biological research.
resultsThe theme of BioHackathon 2010 was the 'Semantic Web', and all attendees gathered with the shared goal of producing Semantic Web data from their respective resources, and/or consuming or interacting those data using their tools and interfaces. We discussed on topics including guidelines for designing semantic data and interoperability of resources. We consequently developed tools and clients for analysis and visualization.
conclusionWe provide a meeting report from BioHackathon 2010, in which we describe the discussions, decisions, and breakthroughs made as we moved towards compliance with Semantic Web technologies - from source provider, through middleware, to the end-consumer.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.