Evidence map›Paper›PMID 23398456›Full record

ArticleThe Biochemical journal2013

The P-body component USP52/PAN2 is a novel regulator of HIF1A mRNA stability.

John S Bett, Adel F M Ibrahim, Amit K Garg, Van Kelly, Patrick Pedrioli, Sonia Rocha, Ronald T Hay

Open access · hybridAbstract read
In one paragraph

Article in The Biochemical journal, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 59 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

John S BettScottish Institute for Cell Signalling, Sir James Black Centre, College of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, Scotland, UK.
Adel F M Ibrahim
Amit K Garg
Van Kelly
Patrick Pedrioli
Sonia Rocha
Ronald T Hay
University of Dundee · GB

Funding

Cancer Research UK 12918Cancer Research UK A12918Medical Research Council G1100713Wellcome Trust 083524Wellcome Trust 097945
6 · The paper itself

Abstract

HIF1A (hypoxia-inducible factor 1α) is the master regulator of the cellular response to hypoxia and is implicated in cancer progression. Whereas the regulation of HIF1A protein in response to oxygen is well characterized, less is known about the fate of HIF1A mRNA. In the present study, we have identified the pseudo-DUB (deubiquitinating enzyme)/deadenylase USP52 (ubiquitin-specific protease 52)/PAN2 [poly(A) nuclease 2] as an important regulator of the HIF1A-mediated hypoxic response. Depletion of USP52 reduced HIF1A mRNA and protein levels and resulted in reduced expression of HIF1A-regulated hypoxic targets due to a 3'-UTR (untranslated region)-dependent poly(A)-tail-length-independent destabilization in HIF1A mRNA. MS analysis revealed an association of USP52 with several P-body (processing body) components and we confirmed further that USP52 protein and HIF1A mRNA co-localized with cytoplasmic P-bodies. Importantly, P-body dispersal by knockdown of GW182 or LSM1 resulted in a reduction of HIF1A mRNA levels. These data uncover a novel role for P-bodies in regulating HIF1A mRNA stability, and demonstrate that USP52 is a key component of P-bodies required to prevent HIF1A mRNA degradation.

Indexed as

RNA Stability3' Untranslated RegionsAU Rich ElementsAutoantigensCell HypoxiaCell LineCytoplasmic StructuresExoribonucleasesGene Knockdown TechniquesHumansHypoxia-Inducible Factor 1, alpha SubunitPoly AProto-Oncogene ProteinsRNA-Binding Proteins3' Untranslated RegionsAutoantigensExoribonucleasesHIF1A protein, humanHypoxia-Inducible Factor 1, alpha SubunitLSM1 protein, humanPAN2 protein, humanPoly AProto-Oncogene ProteinsRNA-Binding ProteinsTNRC6A protein, human

Identifiers

PMID23398456
PMCPMC3632086
OpenAlexW2035808431

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.