Evidence map›Paper›PMID 23396351›Full record

ArticleNature structural & molecular biology2013

A recurring motif for antibody recognition of the receptor-binding site of influenza hemagglutinin.

Rui Xu, Jens C Krause, Ryan McBride, James C Paulson, James E Crowe, Ian A Wilson

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 105 papers.

0numbers the graph read from it
0cells of the map it votes in
105citing papers in PubMed
11.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

105 citing papers in PubMed, 144 citations in OpenAlex.

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  14. Signatures of VNature communications · 2023
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45 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Rui XuDepartment of Integrative Structural and Computational Biology, Scripps Research Institute, La Jolla, California, USA.
Jens C Krause
Ryan McBride
James C Paulson
James E Crowe
Ian A Wilson
Scripps Research Institute · USVanderbilt University Medical Center · US

Funding

Structural Basis of Immune Recognition of Glycosylated AntigensU54GM062116 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI NOVOTNY, MILOS · 2001 to 2010
$80.3M
ZWITTERION SURFACTANT DDMAB FOR IMPROV STABIL OF PROTEINP41RR001209 · NCRR · STANFORD UNIVERSITY · PI GONZALEZ, ANA M · 1985 to 2011
$38.9M
X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Viral and Host cDNA Libraries from 1918 Influenza CasesP01AI058113 · NIAID · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI GARCIA-SASTRE, ADOLFO · 2004 to 2010
$20.3M
Molecular Determinants of Cross-Reactive Antibody Response to Influenza in HumansR01AI106002 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI CROWE, JAMES E · 2012 to 2015
$1.5M
NCI NIH HHS Y1-CO-1020NCRR NIH HHS P41 RR001209NCRR NIH HHS P41RR001209NIAID NIH HHS AI058113NIAID NIH HHS HHSN272200900047CNIAID NIH HHS P01 AI058113NIAID NIH HHS R01 AI106002NIGMS NIH HHS GM62116NIGMS NIH HHS P41 GM103393NIGMS NIH HHS P41GM103393NIGMS NIH HHS U54 GM062116NIGMS NIH HHS Y1-GM-1104
6 · The paper itself

Abstract

Influenza virus hemagglutinin (HA) mediates receptor binding and viral entry during influenza infection. The development of receptor analogs as viral-entry blockers has not been successful, which suggests that sialic acid may not be an ideal scaffold to obtain broad, potent HA inhibitors. Here, we report crystal structures of Fab fragments from three human antibodies that neutralize the 1957 pandemic H2N2 influenza virus in complex with H2 HA. All three antibodies use an aromatic residue to plug a conserved cavity in the HA receptor-binding site. Each antibody interacts with the absolutely conserved HA1 Trp153 at the cavity base through π-π stacking with the signature Phe54 of two VH1-69-encoded antibodies or a tyrosine from HCDR3 in the other antibody. This highly conserved interaction can be used as a starting point to design inhibitors targeting this conserved hydrophobic pocket in influenza viruses.

Indexed as

Amino Acid MotifsAmino Acid SequenceAntibodies, NeutralizingAntibodies, ViralAntigen-Antibody ComplexBinding SitesCrystallography, X-RayEpitopesHemagglutinin Glycoproteins, Influenza VirusHumansImmunoglobulin Fab FragmentsInfluenza A Virus, H2N2 SubtypeMolecular Sequence DataMutationProtein ConformationTryptophanAntibodies, NeutralizingAntibodies, ViralAntigen-Antibody ComplexEpitopesHemagglutinin Glycoproteins, Influenza VirusImmunoglobulin Fab FragmentsTryptophanTyrosine

Identifiers

PMID23396351
PMCPMC3594569
OpenAlexW2150661836

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.