Evidence map›Paper›PMID 23396276›Full record

ArticleNucleic acids research2013

Crystal structure of Cex1p reveals the mechanism of tRNA trafficking between nucleus and cytoplasm.

Kayo Nozawa, Ryuichiro Ishitani, Tohru Yoshihisa, Mamoru Sato, Fumio Arisaka, Shuji Kanamaru, Naoshi Dohmae, Dev Mangroo, Bruno Senger, Hubert D Becker and 1 more

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In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Kayo NozawaDepartment of Biophysics and Biochemistry, Graduate School of Science, University of Tokyo, 2-11-16 Yayoi, Bunkyo-ku, 113-0032 Tokyo, Japan.
Ryuichiro Ishitani
Tohru Yoshihisa
Mamoru Sato
Fumio Arisaka
Shuji Kanamaru
Naoshi Dohmae
Dev Mangroo
Bruno Senger
Hubert D Becker
Osamu Nureki
Nagoya University · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In all eukaryotes, transcribed precursor tRNAs are maturated by processing and modification processes in nucleus and are transported to the cytoplasm. The cytoplasmic export protein (Cex1p) captures mature tRNAs from the nuclear export receptor (Los1p) on the cytoplasmic side of the nuclear pore complex, and it delivers them to eukaryotic elongation factor 1α. This conserved Cex1p function is essential for the quality control of mature tRNAs to ensure accurate translation. However, the structural basis of how Cex1p recognizes tRNAs and shuttles them to the translational apparatus remains unclear. Here, we solved the 2.2 Å resolution crystal structure of Saccharomyces cerevisiae Cex1p with C-terminal 197 disordered residues truncated. Cex1p adopts an elongated architecture, consisting of N-terminal kinase-like and a C-terminal α-helical HEAT repeat domains. Structure-based biochemical analyses suggested that Cex1p binds tRNAs on its inner side, using the positively charged HEAT repeat surface and the C-terminal disordered region. The N-terminal kinase-like domain acts as a scaffold to interact with the Ran-exportin (Los1p·Gsp1p) machinery. These results provide the structural basis of Los1p·Gsp1p·Cex1p·tRNA complex formation, thus clarifying the dynamic mechanism of tRNA shuttling from exportin to the translational apparatus.

Indexed as

Models, MolecularActive Transport, Cell NucleusCell NucleusCrystallography, X-RayCytoplasmMonomeric GTP-Binding ProteinsNuclear Pore Complex ProteinsNuclear ProteinsNucleocytoplasmic Transport ProteinsProtein BindingProtein MultimerizationProtein Structure, TertiaryRNA-Binding ProteinsRNA, TransferSaccharomyces cerevisiae ProteinsCex1 protein, S cerevisiaeGSP1 protein, S cerevisiaeLos1 protein, S cerevisiaeMonomeric GTP-Binding ProteinsNuclear Pore Complex ProteinsNuclear ProteinsNucleocytoplasmic Transport ProteinsRNA-Binding ProteinsRNA, TransferSaccharomyces cerevisiae Proteins

Identifiers

PMID23396276
PMCPMC3616705
OpenAlexW2071602900

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.