Evidence map›Paper›PMID 23396137›Full record

ArticleNature genetics2013

Identification of multiple independent susceptibility loci in the HLA region in Behçet's disease.

Travis Hughes, Patrick Coit, Adam Adler, Vuslat Yilmaz, Kenan Aksu, Nursen Düzgün, Gokhan Keser, Ayse Cefle, Ayten Yazici, Andac Ergen and 9 more

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Nature genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed, 5 pooled it
18.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 5 syntheses or guidelines pooled it, 140 citations in OpenAlex.

  1. Pooled it
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  6. Article
  7. Review
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  9. Article
  10. Article
  11. Immunopathogenesis of Behçet's disease.Clinical immunology (Orlando, Fla.) · 2023
    Review
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. The Immunogenetics of Vasculitis.Advances in experimental medicine and biology · 2022
    Review
  18. Review
  19. Genetics in Behcet's Disease: An Update Review.Frontiers in ophthalmology · 2022
    Review
  20. The Immunogenetics of Behcet's Disease.Advances in experimental medicine and biology · 2022
    Article

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 12 institutions in 5 countries.

Travis HughesDepartment of Internal Medicine, Division of Rheumatology, University of Michigan, Ann Arbor, Michigan, USA.
Patrick Coit
Adam Adler
Vuslat Yilmaz
Kenan Aksu
Nursen Düzgün
Gokhan Keser
Ayse Cefle
Ayten Yazici
Andac Ergen
Erkan Alpsoy
Carlo Salvarani
Bruno Casali
Ina Kötter
Javier Gutierrez-Achury
Cisca Wijmenga
Haner Direskeneli
Güher Saruhan-Direskeneli
Amr H Sawalha
University of Michigan–Ann Arbor · USAzienda Ospedaliera S.Maria · ITEge University · TRIstanbul University · TRKocaeli Üniversitesi · TRUniversity of Groningen · NLAkdeniz University · TRAnkara University · TRMarmara University · TROklahoma Medical Research Foundation · USOkmeydanı Eğitim ve Araştırma Hastanesi · TRUniversity of Tübingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Behçet's disease is an inflammatory disease characterized by recurrent oral and genital ulcers and significant organ involvement. Localizing the genetic association between HLA-B*51 and Behçet's disease and exploring additional susceptibility loci in the human leukocyte antigen (HLA) region are complicated by the strong linkage disequilibrium in this region. We genotyped 8,572 variants in the extended HLA locus and carried out imputation and meta-analysis of 24,834 variants in 2 independent Behçet's disease cohorts from 2 ancestry groups. Genotyped SNPs were used to infer classical HLA alleles in the HLA-A, HLA-B, HLA-C, HLA-DQA1, HLA-DQB1 and HLA-DRB1 loci. Our data suggest that the robust HLA-B*51 association in Behçet's disease is explained by a variant located between the HLA-B and MICA genes (rs116799036: odds ratio (OR) = 3.88, P = 9.42 × 10(-50)). Three additional independent genetic associations within PSORS1C1 (rs12525170: OR = 3.01, P = 3.01 × 10(-26)), upstream of HLA-F-AS1 (rs114854070: OR = 1.95, P = 7.84 × 10(-14)) and with HLA-Cw*1602 (OR = 5.38, P = 6.07 × 10(-18)) were also identified and replicated.

Indexed as

Genetic Association StudiesGenetic Predisposition to DiseaseAllelesBehcet SyndromeChromosome MappingHaplotypesHistocompatibility Antigens Class IHLA-B51 AntigenHLA-C AntigensHumansLinkage DisequilibriumPolymorphism, Single NucleotideProteinsHistocompatibility Antigens Class IHLA-B51 AntigenHLA-C AntigensHLA-F antigensMHC class I-related chain AProteinsPSORS1C1 protein, human

Identifiers

PMID23396137
OpenAlexW1978041121

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.