Evidence map›Paper›PMID 23395680›Full record

ArticleBiochemical and biophysical research communications2013

New partner proteins containing novel internal recognition motif for human glutaminase interacting protein (hGIP).

Sevil Zencir, Monimoy Banerjee, Melanie J Dobson, Ferhan Ayaydin, Elfrieda Ayaydin Fodor, Zeki Topcu, Smita Mohanty

Open access · greenAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 4 countries.

Sevil ZencirDepartment of Medical Biology, Faculty of Medicine, Pamukkale University, Denizli 20070, Turkey.
Monimoy Banerjee
Melanie J Dobson
Ferhan Ayaydin
Elfrieda Ayaydin Fodor
Zeki Topcu
Smita Mohanty
Auburn University · USHungarian Academy of Sciences · HUDalhousie University · CAEge University · TRPamukkale University · TR

Funding

Molecular basis of congenital disorders of glycosylation: mechanisms of oligosachR21DK082397 · NIDDK · AUBURN UNIVERSITY AT AUBURN · PI MOHANTY, SMITA · 2009 to 2010
$528k
NIDDK NIH HHS DK082397NIDDK NIH HHS R21 DK082397
6 · The paper itself

Abstract

Regulation of gene expression in cells is mediated by protein-protein, DNA-protein and receptor-ligand interactions. PDZ (PSD-95/Discs-large/ZO-1) domains are protein-protein interaction modules. PDZ-containing proteins function in the organization of multi-protein complexes controlling spatial and temporal fidelity of intracellular signaling pathways. In general, PDZ proteins possess multiple domains facilitating distinct interactions. The human glutaminase interacting protein (hGIP) is an unusual PDZ protein comprising entirely of a single PDZ domain and plays pivotal roles in many cellular processes through its interaction with the C-terminus of partner proteins. Here, we report the identification by yeast two-hybrid screening of two new hGIP-interacting partners, DTX1 and STAU1. Both proteins lack the typical C-terminal PDZ recognition motif but contain a novel internal hGIP recognition motif recently identified in a phage display library screen. Fluorescence resonance energy transfer and confocal microscopy analysis confirmed the in vivo association of hGIP with DTX1 and STAU1 in mammalian cells validating the previous discovery of S/T-X-V/L-D as a consensus internal motif for hGIP recognition. Similar to hGIP, DTX1 and STAU1 have been implicated in neuronal function. Identification of these new interacting partners furthers our understanding of GIP-regulated signaling cascades and these interactions may represent potential new drug targets in humans.

Indexed as

Amino Acid MotifsBrainCytoskeletal ProteinsFetusFluorescence Resonance Energy TransferGene LibraryHeLa CellsHumansIntracellular Signaling Peptides and ProteinsMicroscopy, ConfocalMolecular Sequence DataPDZ DomainsProtein Interaction MappingRNA-Binding ProteinsSaccharomyces cerevisiaeUbiquitin-Protein LigasesCytoskeletal ProteinsDTX1 protein, humanIntracellular Signaling Peptides and ProteinsRNA-Binding ProteinsSTAU1 protein, humanTAX1BP3 protein, humanUbiquitin-Protein Ligases

Identifiers

PMID23395680
PMCPMC3594348
OpenAlexW1975389128

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.