Evidence map›Paper›PMID 23395637›Full record

ArticleCell reports2013

Genome-wide association of Yorkie with chromatin and chromatin-remodeling complexes.

Hyangyee Oh, Matthew Slattery, Lijia Ma, Alex Crofts, Kevin P White, Richard S Mann, Kenneth D Irvine

Abstract read
In one paragraph

Article in Cell reports, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed.

  1. Article
  2. Yorkie/YAP Interactors: Fine-Tuning the Hippo Pathway Output.Cold Spring Harbor perspectives in biology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Hippo signaling regulates cuticle pigmentation and dopamine metabolism inbioRxiv : the preprint server for biology · 2025
    Article
  7. Targeting the Hippo pathway in cancer.Nature reviews. Drug discovery · 2025
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Control of stem cell renewal and fate by YAP and TAZ.Nature reviews. Molecular cell biology · 2023
    Review
  19. Article
  20. Article

40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Hyangyee OhHoward Hughes Medical Institute, Waksman Institute, and Department of Molecular Biology and Biochemistry, Rutgers University, Piscataway, NJ 08854, USA.
Matthew Slattery
Lijia Ma
Alex Crofts
Kevin P White
Richard S Mann
Kenneth D Irvine

Funding

CORE: ADMINISTRATIVEP50GM081892 · NIGMS · UNIVERSITY OF CHICAGO · PI WHITE, KEVIN P. · 2008 to 2013
$15.9M
A Cis Regulatory map of the Drosophila GenomeU01HG004264 · NHGRI · UNIVERSITY OF CHICAGO · PI WHITE, KEVIN P. · 2007 to 2011
$12.1M
Proximo-distal Patterning inthe Drosophila appendegesR01GM058575 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MANN, RICHARD S · 1999 to 2016
$5.7M
MOLECULAR GENETICS OF SEGMENT IDENTITYR01GM054510 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MANN, RICHARD S · 1996 to 2015
$5.5M
Growth regulation by the Fat signaling pathwayR01GM078620 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI IRVINE, KENNETH D · 2007 to 2018
$3.3M
Howard Hughes Medical InstituteNHGRI NIH HHS 3U01HG004264NHGRI NIH HHS U01 HG004264NIGMS NIH HHS 5P50GM081892NIGMS NIH HHS 5R01GM054510NIGMS NIH HHS GM078620NIGMS NIH HHS P50 GM081892NIGMS NIH HHS R01 GM054510NIGMS NIH HHS R01 GM058575NIGMS NIH HHS R01 GM078620
6 · The paper itself

Abstract

The Hippo pathway regulates growth through the transcriptional coactivator Yorkie, but how Yorkie promotes transcription remains poorly understood. We address this by characterizing Yorkie's association with chromatin and by identifying nuclear partners that effect transcriptional activation. Coimmunoprecipitation and mass spectrometry identify GAGA factor (GAF), the Brahma complex, and the Mediator complex as Yorkie-associated nuclear protein complexes. All three are required for Yorkie's transcriptional activation of downstream genes, and GAF and the Brahma complex subunit Moira interact directly with Yorkie. Genome-wide chromatin-binding experiments identify thousands of Yorkie sites, most of which are associated with elevated transcription, based on genome-wide analysis of messenger RNA and histone H3K4Me3 modification. Chromatin binding also supports extensive functional overlap between Yorkie and GAF. Our studies suggest a widespread role for Yorkie as a regulator of transcription and identify recruitment of the chromatin-modifying GAF protein and BRM complex as a molecular mechanism for transcriptional activation by Yorkie.

Indexed as

Chromatin Assembly and DisassemblyGenomeAnimalsCell Cycle ProteinsChromatinDNA-Binding ProteinsDrosophilaDrosophila ProteinsHistonesMediator ComplexNuclear ProteinsProtein BindingRNA InterferenceRNA, MessengerRNA, Small InterferingTrans-Activatorsbrm protein, DrosophilaCell Cycle ProteinsChromatinDNA-Binding ProteinsDrosophila ProteinsHistonesMediator Complexmor protein, DrosophilaNuclear ProteinsRNA, MessengerRNA, Small InterferingTrans-ActivatorsTranscription FactorsTrl protein, DrosophilaYAP-Signaling ProteinsYki protein, Drosophila

Identifiers

PMID23395637
PMCPMC3633442

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.