Evidence map›Paper›PMID 23394078›Full record

ArticleBMC microbiology2013

Shewanella oneidensis Hfq promotes exponential phase growth, stationary phase culture density, and cell survival.

Christopher M Brennan, Meghan L Keane, Taylor M Hunt, Matthew T Goulet, Nicholas Q Mazzucca, Zachary Sexton, Taylor Mezoian, Katherine E Douglas, Jessica M Osborn, Brett J Pellock

Abstract read
In one paragraph

Article in BMC microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Effects of RyhB on Fur regulation of cytochromeApplied and environmental microbiology · 2026
    Article
  2. Article
  3. Analysis of Lsm Protein-Mediated Regulation in the HaloarchaeonInternational journal of molecular sciences · 2024
    Article
  4. The RNA chaperone Hfq has a multifaceted role inFrontiers in cellular and infection microbiology · 2024
    Article
  5. Pleiotropic Effects of Hfq on the CytochromeApplied and environmental microbiology · 2022
    Article
  6. Birnessite films are sensitive indicators of microbial manganese reduction in soil.Soil Science Society of America journal. Soil Science Society of America · 2022
    Article
  7. Article
  8. Article
  9. mSphere
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Christopher M BrennanDepartment of Biology, Providence College, Providence, RI, USA.
Meghan L Keane
Taylor M Hunt
Matthew T Goulet
Nicholas Q Mazzucca
Zachary Sexton
Taylor Mezoian
Katherine E Douglas
Jessica M Osborn
Brett J Pellock

Funding

Training CoreP20GM103430 · NIGMS · UNIVERSITY OF RHODE ISLAND · PI Bongsup P Cho · 2012 to 2026
$63.6M
NIGMS NIH HHS 8 P20 GM103430-12NIGMS NIH HHS P20 GM103430
6 · The paper itself

Abstract

backgroundHfq is an RNA chaperone protein that has been broadly implicated in sRNA function in bacteria. Here we describe the construction and characterization of a null allele of the gene that encodes the RNA chaperone Hfq in Shewanella oneidensis strain MR-1, a dissimilatory metal reducing bacterium.

resultsLoss of hfq in S. oneidensis results in a variety of mutant phenotypes, all of which are fully complemented by addition of a plasmid-borne copy of the wild type hfq gene. Aerobic cultures of the hfq∆ mutant grow more slowly through exponential phase than wild type cultures, and hfq∆ cultures reach a terminal cell density in stationary phase that is ~2/3 of that observed in wild type cultures. We have observed a similar growth phenotype when the hfq∆ mutant is cultured under anaerobic conditions with fumarate as the terminal electron acceptor, and we have found that the hfq∆ mutant is defective in Cr(VI) reduction. Finally, the hfq∆ mutant exhibits a striking loss of colony forming units in extended stationary phase and is highly sensitive to oxidative stress induced by H2O2 or methyl viologen (paraquat).

conclusionsThe hfq mutant in S. oneidensis exhibits pleiotropic phenotypes, including a defect in metal reduction. Our results also suggest that hfq mutant phenotypes in S. oneidensis may be at least partially due to increased sensitivity to oxidative stress.

Indexed as

Microbial ViabilityAerobiosisAnaerobiosisBacterial LoadChromiumColony Count, MicrobialGene DeletionGenetic Complementation TestHost Factor 1 ProteinOxidation-ReductionOxidative StressShewanellaChromiumHost Factor 1 Protein

Identifiers

PMID23394078
PMCPMC3575234

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.