Evidence map›Paper›PMID 23393191›Full record

ArticleNucleic acids research2013

Structure-function relationships of two paralogous single-stranded DNA-binding proteins from Streptomyces coelicolor: implication of SsbB in chromosome segregation during sporulation.

Tina Paradzik, Nives Ivic, Zelimira Filic, Babu A Manjasetty, Paul Herron, Marija Luic, Dusica Vujaklija

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Crystal Structure of an SSB Protein fromInternational journal of molecular sciences · 2022
    Article
  6. Characterization of the Chimeric PriB-SSBc Protein.International journal of molecular sciences · 2021
    Article
  7. The Essential, Ubiquitous Single-Stranded DNA-Binding Proteins.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Tina ParadzikDivision of Molecular Biology, Rudjer Boskovic Institute, Zagreb 10002, Croatia.
Nives Ivic
Zelimira Filic
Babu A Manjasetty
Paul Herron
Marija Luic
Dusica Vujaklija
Rudjer Boskovic Institute · HRUniversity of Strathclyde · GB

Funding

Intracellular Trafficking of Antisense and siRNA Oligonucleotides in Cancer CellsR01CA151964 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI JULIANO, RUDOLPH · 2011 to 2014
$1.2M
Biotechnology and Biological Sciences Research Council BB/D521657/1NCI NIH HHS R01 CA151964
6 · The paper itself

Abstract

The linear chromosome of Streptomyces coelicolor contains two paralogous ssb genes, ssbA and ssbB. Following mutational analysis, we concluded that ssbA is essential, whereas ssbB plays a key role in chromosome segregation during sporulation. In the ssbB mutant, ∼30% of spores lacked DNA. The two ssb genes were expressed differently; in minimal medium, gene expression was prolonged for both genes and significantly upregulated for ssbB. The ssbA gene is transcribed as part of a polycistronic mRNA from two initiation sites, 163 bp and 75 bp upstream of the rpsF translational start codon. The ssbB gene is transcribed as a monocistronic mRNA, from an unusual promoter region, 73 bp upstream of the AUG codon. Distinctive DNA-binding affinities of single-stranded DNA-binding proteins monitored by tryptophan fluorescent quenching and electrophoretic mobility shift were observed. The crystal structure of SsbB at 1.7 Å resolution revealed a common OB-fold, lack of the clamp-like structure conserved in SsbA and previously unpublished S-S bridges between the A/B and C/D subunits. This is the first report of the determination of paralogous single-stranded DNA-binding protein structures from the same organism. Phylogenetic analysis revealed frequent duplication of ssb genes in Actinobacteria, whereas their strong retention suggests that they are involved in important cellular functions.

Indexed as

Chromosome SegregationActinobacteriaBacterial ProteinsBase SequenceDNA-Binding ProteinsDNA, Single-StrandedModels, MolecularMolecular Sequence DataPhylogenyPromoter Regions, GeneticProtein BindingSpores, BacterialStreptomyces coelicolorStructure-Activity RelationshipTranscription Initiation SiteBacterial ProteinsDNA-Binding ProteinsDNA, Single-Stranded

Identifiers

PMID23393191
PMCPMC3616714
OpenAlexW2124850952

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.