Evidence map›Paper›PMID 23392640›Full record

ArticleCurrent protocols in immunology2013

Measurement of MHC/peptide interactions by gel filtration or monoclonal antibody capture.

John Sidney, Scott Southwood, Carrie Moore, Carla Oseroff, Clemencia Pinilla, Howard M Grey, Alessandro Sette

Abstract read
In one paragraph

Article in Current protocols in immunology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 107 papers.

0numbers the graph read from it
0cells of the map it votes in
107citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

107 citing papers in PubMed, 140 citations in OpenAlex.

  1. Trial
  2. Article
  3. Computational design of HLA class I superbinders for broad T cell immunogenicity.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Thioamide Analogues of MHC I Antigen Peptides.Journal of the American Chemical Society · 2023
    Article
  14. Article
  15. T cell deletional tolerance restricts AQP4 but not MOG CNS autoimmunity.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

47 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

John SidneyLa Jolla Institute for Allergy and Immunology, La Jolla, California, USA.
Scott Southwood
Carrie Moore
Carla Oseroff
Clemencia Pinilla
Howard M Grey
Alessandro Sette
La Jolla Institute for Immunology · US

Funding

Understanding mechanisms in specific immunotherapy (SIT)U19AI100275 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI SETTE, ALESSANDRO · 2012 to 2017
$8.1M
NIAID NIH HHS HHSN272200700048CNIAID NIH HHS HHSN272200900042CNIAID NIH HHS HHSN272200900044CNIAID NIH HHS U19 AI100275PHS HHS HHSN 27220070048CPHS HHS HHSN 272200900042CPHS HHS HHSN 272200900044CPHS HHS U19 A110275
6 · The paper itself

Abstract

This unit describes a technique for the direct and quantitative measurement of the capacity of peptide ligands to bind Class I and Class II MHC molecules. The binding of a peptide of interest to MHC is assessed based on its ability to inhibit the binding of a radiolabeled probe peptide to purified MHC molecules. This unit includes protocols for the purification of Class I and Class II MHC molecules by affinity chromatography, and for the radiolabeling of peptides using the chloramine T method. An alternate protocol describes alterations in the basic protocol that are necessary when performing direct binding assays, which are required for (1) selecting appropriate high-affinity, assay-specific, radiolabeled ligands, and (2) determining the amount of MHC necessary to yield assays with the highest sensitivity. After a predetermined incubation period, dependent upon the allele under examination, the bound and unbound radiolabeled species are separated, and their relative amounts are determined. Three methods for separation are described, two utilizing size-exclusion gel-filtration chromatography and a third using monoclonal antibody capture of MHC. Data analysis for each method is also explained.

Indexed as

Radioligand AssayAnimalsAntibodies, MonoclonalAntigensChromatography, GelHistocompatibility AntigensHumansPeptide FragmentsProtein BindingAntibodies, MonoclonalAntigensHistocompatibility AntigensPeptide Fragments

Identifiers

PMID23392640
PMCPMC3626435
OpenAlexW1927635887

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.