Evidence map›Paper›PMID 23391688›Full record

ArticleDevelopmental biology2013

Functional studies of the Ciona intestinalis myogenic regulatory factor reveal conserved features of chordate myogenesis.

Stephanie A Izzi, Bonnie J Colantuono, Kelly Sullivan, Parul Khare, Thomas H Meedel

Abstract read
In one paragraph

Article in Developmental biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Stephanie A IzziDepartment of Biology, Rhode Island College, Providence, RI 02908, USA.
Bonnie J Colantuono
Kelly Sullivan
Parul Khare
Thomas H Meedel
Providence College · USMontreal Neurological Institute and Hospital · CA

Funding

Functional Conservation of Myogenic Regulatory FactorsR15HD047357 · NICHD · RHODE ISLAND COLLEGE · PI MEEDEL, THOMAS H · 2004 to 2010
$474k
NICHD NIH HHS 2R15HD047357-02NICHD NIH HHS 3R15HD047357-02S1NICHD NIH HHS 3R15HD047357-02S3NICHD NIH HHS 3R15HD47357-02S2NICHD NIH HHS R15 HD047357
6 · The paper itself

Abstract

Ci-MRF is the sole myogenic regulatory factor (MRF) of the ascidian Ciona intestinalis, an invertebrate chordate. In order to investigate its properties we developed a simple in vivo assay based on misexpressing Ci-MRF in the notochord of Ciona embryos. We used this assay to examine the roles of three structural motifs that are conserved among MRFs: an alanine-threonine (Ala-Thr) dipeptide of the basic domain that is known in vertebrates as the myogenic code, a cysteine/histidine-rich (C/H) domain found just N-terminal to the basic domain, and a carboxy-terminal amphipathic α-helix referred to as Helix III. We show that the Ala-Thr dipeptide is necessary for normal Ci-MRF function, and that while eliminating the C/H domain or Helix III individually has no demonstrable effect on Ci-MRF, simultaneous loss of both motifs significantly reduces its activity. Our studies also indicate that direct interaction between CiMRF and an essential E-box of Ciona Troponin I is required for the expression of this muscle-specific gene and that multiple classes of MRF-regulated genes exist in Ciona. These findings are consistent with substantial conservation of MRF-directed myogenesis in chordates and demonstrate for the first time that the Ala/Thr dipeptide of the basic domain of an invertebrate MRF behaves as a myogenic code.

Indexed as

Gene Expression Regulation, DevelopmentalAlanineAnimalsChordataCiona intestinalisModels, BiologicalMuscle DevelopmentMusclesMutationMyogenic Regulatory FactorsNotochordPeptidesProtein Structure, SecondaryProtein Structure, TertiaryThreonineAlanineMyogenic Regulatory FactorsPeptidesThreonine

Identifiers

PMID23391688
PMCPMC3673305
OpenAlexW1995464008

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.