Evidence map›Paper›PMID 23390597›Full record

ArticleG3 (Bethesda, Md.)2013

Fine-scale mapping of the Nasonia genome to chromosomes using a high-density genotyping microarray.

Christopher A Desjardins, Jürgen Gadau, Jacqueline A Lopez, Oliver Niehuis, Amanda R Avery, David W Loehlin, Stephen Richards, John K Colbourne, John H Werren

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
6.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 38 citations in OpenAlex.

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  18. Genetic and epigenetic architecture of sex-biased expression in the jewel wasps Nasonia vitripennis and giraulti.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 2 countries.

Christopher A DesjardinsDepartment of Biology, University of Rochester, Rochester, New York 14627, USA.
Jürgen Gadau
Jacqueline A Lopez
Oliver Niehuis
Amanda R Avery
David W Loehlin
Stephen Richards
John K Colbourne
John H Werren
University of Rochester · USIndiana University Bloomington · USArizona State University · USBaylor College of Medicine · USBroad Institute · USZoological Research Museum Alexander Koenig · DE

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
Genetic and genomic tools for the emerging model organsism, NasoniaR24GM084917 · NIGMS · UNIVERSITY OF ROCHESTER · PI WERREN, JOHN HAYNES · 2008 to 2011
$1.5M
NHGRI NIH HHS U54 HG003273NIGMS NIH HHS R24 GM084917NIGMS NIH HHS R24GM084917
6 · The paper itself

Abstract

Nasonia, a genus of four closely related parasitoid insect species, is a model system for genetic research. Their haplodiploid genetics (haploid males and diploid females) and interfertile species are advantageous for the genetic analysis of complex traits and the genetic basis of species differences. A fine-scale genomic map is an important tool for advancing genetic studies in this system. We developed and used a hybrid genotyping microarray to generate a high-resolution genetic map that covers 79% of the sequenced genome of Nasonia vitripennis. The microarray is based on differential hybridization of species-specific oligos between N. vitripennis and Nasonia giraulti at more than 20,000 markers spanning the Nasonia genome. The map places 729 scaffolds onto the five linkage groups of Nasonia, including locating many smaller scaffolds that would be difficult to map by other means. The microarray was used to characterize 26 segmental introgression lines containing chromosomal regions from one species in the genetic background of another. These segmental introgression lines have been used for rapid screening and mapping of quantitative trait loci involved in species differences. Finally, the microarray is extended to bulk-segregant analysis and genotyping of other Nasonia species combinations. These resources should further expand the usefulness of Nasonia for studies of the genetic basis and architecture of complex traits and speciation.

Indexed as

Genome, InsectAnimalsChromosome MappingChromosomesDiploidyFemaleGenetic LinkageGenotypeHaploidyHybridization, GeneticMaleOligonucleotide Array Sequence AnalysisQuantitative Trait LociWasps

Identifiers

PMID23390597
PMCPMC3564981
OpenAlexW2111244418

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.