Evidence map›Paper›PMID 23390377›Full record

ArticleCancer immunity2013

BORIS/CTCFL mRNA isoform expression and epigenetic regulation in epithelial ovarian cancer.

Petra A Link, Wa Zhang, Kunle Odunsi, Adam R Karpf

Abstract read
In one paragraph

Article in Cancer immunity, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Nucleic acid vaccination strategies for ovarian cancer.Frontiers in bioengineering and biotechnology · 2022
    Review
  6. Review
  7. Ovarian Cancer: Therapeutic Strategies to Overcome Immune Suppression.Advances in experimental medicine and biology · 2021
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Targeting CTCFL/BORIS for the immunotherapy of cancer.Cancer immunology, immunotherapy : CII · 2018
    Review
  14. BORIS: a key regulator of cancer stemness.Cancer cell international · 2018
    Review
  15. Intragenic DNA methylation and BORIS-mediated cancer-specific splicing contribute to the Warburg effect.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Biomedical reports · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Petra A LinkDepartment of Pharmacology and Therapeutics, Roswell Park Cancer Institute, Buffalo, NY, USA.
Wa Zhang
Kunle Odunsi
Adam R Karpf
Roswell Park Comprehensive Cancer Center · US

Funding

Epigenetic regulation of cancer/germ-line antigen gene expressionR01CA116674 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI KARPF, ADAM R. · 2006 to 2010
$1.4M
NCI NIH HHS R01 CA116674NCI NIH HHS R01CA116674
6 · The paper itself

Abstract

Cancer germline (CG) genes are normally expressed in germ cells and aberrantly expressed in a variety of cancers; their immunogenicity has led to the widespread development of cancer vaccines targeting these antigens. BORIS/CTCFL is an autosomal CG antigen and promising cancer vaccine target. BORIS is the only known paralog of CTCF, a gene intimately involved in genomic imprinting, chromatin insulation, and nuclear regulation. We have previously shown that BORIS is expressed in epithelial ovarian cancer (EOC) and that its expression coincides with promoter and global DNA hypomethylation. Recently, 23 different BORIS mRNA variants have been described, and have been functionally grouped into six BORIS isoform families (sf1-sf6). In the present study, we have characterized the expression of BORIS isoform families in normal ovary (NO) and EOC, the latter of which were selected to include two groups with widely varying global DNA methylation status. We find selective expression of BORIS isoform families in NO, which becomes altered in EOC, primarily by the activation of BORIS sf1 in EOC. When comparing EOC samples based on methylation status, we find that BORIS sf1 and sf2 isoform families are selectively activated in globally hypomethylated tumors. In contrast, CTCF is downregulated in EOC, and the ratio of BORIS sf1, sf2, and sf6 isoform families as a function of CTCF is elevated in hypomethylated tumors. Finally, the expression of all BORIS isoform families was induced to varying extents by epigenetic modulatory drugs in EOC cell lines, particularly when DNMT and HDAC inhibitors were used in combination.

Indexed as

Epigenesis, GeneticGene Expression Regulation, NeoplasticCarcinoma, Ovarian EpithelialDNA-Binding ProteinsDNA MethylationFemaleHumansLong Interspersed Nucleotide ElementsMaleMiddle AgedNeoplasms, Glandular and EpithelialOvarian NeoplasmsOvaryProtein IsoformsRNA, MessengerTestisCTCFL protein, humanDNA-Binding ProteinsProtein IsoformsRNA, MessengerBORISCTCFDNA methylationepigeneticsovarian cancer

Identifiers

PMID23390377
PMCPMC3559194
OpenAlexW2122911471

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.