Evidence map›Paper›PMID 23390308›Full record

ArticleJournal of leukocyte biology2013

VDR hypermethylation and HIV-induced T cell loss.

Nirupama Chandel, Mohammad Husain, Hersh Goel, Divya Salhan, Xiqian Lan, Ashwani Malhotra, Joseph McGowan, Pravin C Singhal

Open access · greenAbstract read
In one paragraph

Article in Journal of leukocyte biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 30 citations in OpenAlex.

  1. Trial
  2. Article
  3. Methylation of the Vitamin D Receptor Gene in Human Disorders.International journal of molecular sciences · 2023
    Review
  4. Review
  5. Deciphering DNA Methylation in HIV Infection.Frontiers in immunology · 2021
    Review
  6. Policing Cancer: Vitamin D Arrests the Cell Cycle.International journal of molecular sciences · 2020
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Renin modulates HIV replication in T cells.Journal of leukocyte biology · 2014
    Article
  16. Vitamin D and the epigenome.Frontiers in physiology · 2014
    Review
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Nirupama ChandelImmunology Center, Feinstein Institute for Medical Research, Hofstra North Shore-Long Island Jewish Health System School ofMedicine at Hofstra University, Hempstead, New York, USA.
Mohammad Husain
Hersh Goel
Divya Salhan
Xiqian Lan
Ashwani Malhotra
Joseph McGowan
Pravin C Singhal
Northwell Health · USHofstra University · USFeinstein Institute for Medical Research · US

Funding

p66ShcA in HIV associated NephropathyR01DK083931 · NIDDK · FEINSTEIN INSTITUTE FOR MEDICAL RESEARCH · PI SINGHAL, PRAVIN C · 2010 to 2013
$2.5M
Epigenetic factors and HIV-associated NephropathyR01DK098074 · NIDDK · FEINSTEIN INSTITUTE FOR MEDICAL RESEARCH · PI SINGHAL, PRAVIN C · 2013 to 2016
$2.5M
Renin Angioensin Aldosterone System in Drub Abuse and HIV-associated NephropathyR01DK084910 · NIDDK · FEINSTEIN INSTITUTE FOR MEDICAL RESEARCH · PI SINGHAL, PRAVIN C · 2010 to 2014
$1.7M
NIDDK NIH HHS R01 DK083931NIDDK NIH HHS R01 DK084910NIDDK NIH HHS R01DK084910NIDDK NIH HHS R01 DK098074
6 · The paper itself

Abstract

Epigenetics contributes to the development of variety of diseases by modulation of gene expression. We evaluated the effect of HIV-induced VDR methylation on loss of TCs. HIV/TC displayed enhanced VDR-CpG methylation and increased expression of Dnmt3b but attenuated expression of VDR. A demethylating agent, AZA, inhibited this effect of HIV. HIV/TC also displayed the activation of the RAS, which was reversed by EB (a VDA). Further, HIV/TCs displayed enhanced generation of ROS and induction of DSBs but attenuated DNA repair response. However, in the presence of AZA, EB, LOS (a RAS blocker), Cat, and tempol (free radical scavengers), HIV-induced TC ROS generation and induction of DSBs were attenuated but associated with enhanced DNA repair. Additionally, AZA, EB, and LOS provided protection against HIV-induced TC apoptosis. These findings suggested that HIV-induced TC apoptosis was mediated through ROS generation in response to HIV-induced VDR methylation and associated activation of the RAS.

Indexed as

Angiotensin II Type 1 Receptor BlockersAntimetabolites, AntineoplasticApoptosisAzacitidineCalcitriolCatalaseCells, CulturedCpG IslandsDNA (Cytosine-5-)-MethyltransferasesDNA MethylationDNA Methyltransferase 3BDNA RepairEnzyme InhibitorsEpigenesis, GeneticGene Expression Regulation, NeoplasticHIV-1Angiotensin II Type 1 Receptor BlockersAntimetabolites, AntineoplasticAzacitidineCalcitriolCatalaseDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3BEnzyme InhibitorsLosartanras ProteinsReactive Oxygen SpeciesReceptors, Calcitriolseocalcitol

Identifiers

PMID23390308
PMCPMC3597838
OpenAlexW2129812527

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.