Evidence map›Paper›PMID 23386684›Full record

ArticleJournal of experimental botany2013

Association of candidate genes with drought tolerance traits in diverse perennial ryegrass accessions.

Xiaoqing Yu, Guihua Bai, Shuwei Liu, Na Luo, Ying Wang, Douglas S Richmond, Paula M Pijut, Scott A Jackson, Jianming Yu, Yiwei Jiang

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
13.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 103 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 2 countries.

Xiaoqing YuDepartment of Agronomy, Purdue University, West Lafayette, IN 47907, USA.
Guihua Bai
Shuwei Liu
Na Luo
Ying Wang
Douglas S Richmond
Paula M Pijut
Scott A Jackson
Jianming Yu
Yiwei Jiang
Purdue University West Lafayette · USCenter for Grain and Animal Health Research · USKansas State University · USNanjing Agricultural University · CNShandong University · CNUniversity of Georgia · USUS Forest Service · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Drought is a major environmental stress limiting growth of perennial grasses in temperate regions. Plant drought tolerance is a complex trait that is controlled by multiple genes. Candidate gene association mapping provides a powerful tool for dissection of complex traits. Candidate gene association mapping of drought tolerance traits was conducted in 192 diverse perennial ryegrass (Lolium perenne L.) accessions from 43 countries. The panel showed significant variations in leaf wilting, leaf water content, canopy and air temperature difference, and chlorophyll fluorescence under well-watered and drought conditions across six environments. Analysis of 109 simple sequence repeat markers revealed five population structures in the mapping panel. A total of 2520 expression-based sequence readings were obtained for a set of candidate genes involved in antioxidant metabolism, dehydration, water movement across membranes, and signal transduction, from which 346 single nucleotide polymorphisms were identified. Significant associations were identified between a putative LpLEA3 encoding late embryogenesis abundant group 3 protein and a putative LpFeSOD encoding iron superoxide dismutase and leaf water content, as well as between a putative LpCyt Cu-ZnSOD encoding cytosolic copper-zinc superoxide dismutase and chlorophyll fluorescence under drought conditions. Four of these identified significantly associated single nucleotide polymorphisms from these three genes were also translated to amino acid substitutions in different genotypes. These results indicate that allelic variation in these genes may affect whole-plant response to drought stress in perennial ryegrass.

Indexed as

Adaptation, BiologicalDroughtsGenes, PlantAllelesAmino Acid SequenceAmino Acid SubstitutionChromosome MappingCytosolHeterozygoteLoliumMicrosatellite RepeatsMolecular Sequence DataMutationPhenotypePhylogenyPlant DiseasesPlant ProteinsSuperoxide DismutaseWater

Identifiers

PMID23386684
PMCPMC3617828
OpenAlexW2134277519

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.