Evidence map›Paper›PMID 23386123›Full record

ArticleEpigenetics2013

Epigenetic repression of LEDGF during UVB exposure by recruitment of SUV39H1 and HDAC1 to the Sp1-responsive elements within LEDGF promoter CpG island.

Biju Bhargavan, Bhavana Chhunchha, Nigar Fatma, Eri Kubo, Anil Kumar, Dhirendra P Singh

Open access · bronzeAbstract read
In one paragraph

Article in Epigenetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Age-related cataracts: Role of unfolded protein response, CaProgress in retinal and eye research · 2017
    Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Biju BhargavanDepartment of Ophthalmology and Visual Sciences, University of Nebraska Medical Center, Omaha, NE, USA.
Bhavana Chhunchha
Nigar Fatma
Eri Kubo
Anil Kumar
Dhirendra P Singh
University of Nebraska at Omaha · USKanazawa Medical University Hospital · JPUniversity of Missouri–Kansas City · USUniversity of Nebraska Medical Center · US

Funding

Gene regulation by LEDGFR01EY013394 · NEI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI SINGH, DHIRENDRA P · 2002 to 2012
$3.0M
NEI NIH HHS EY013394NEI NIH HHS R01 EY013394
6 · The paper itself

Abstract

Expression level of lens epithelial derived growth factor (LEDGF) is vital for LEDGF-mediated cell survival and cytoprotection against proapoptotic stimuli. We previously demonstrated that LEDGF is transcriptionally regulated by Sp1-responsive elements within a CpG island in the LEDGF promoter. Herein, we report on the existence of epigenetic signaling involved in the repression of LEDGF transcription in lens epithelial cells (LECs) facing UVB. UVB exposure led to histone H3 dimethylation and deacetylation at its CpG island, where a histone deacetylase/histone methylase (HDAC1/SUV39H1) complex was recruited. Exposure of LECs to UVB stress altered LEDGF protein and mRNA expression as well as promoter activity, while failing to methylate the CpG island. These events were correlated with increased reactive oxygen species (ROS) and increased cell death. LEDGF promoter activity and expression remained unaltered after 5-Aza treatment, but were relieved with tricostatin A, an inhibitor of HDACs. Expression analysis disclosed that UVB radiation altered the global expression levels of acetylated histone proteins, diminished total histone acetyltransferase (HAT) activity and increased HDAC activity and HDAC1 expression. In silico analysis of LEDGF proximal promoter and ChIP analyses disclosed HDAC1/SUV39H1 complex anchored to the -170/-10 nt promoter regions at Sp1-responsive elements and also attenuated Sp1 binding, resulting in HDAC1- and SUV39H1-dependent deacetylation and dimethylation of H3 at K9. Acetylation of H3K9 was essential for LEDGF active transcription, while enrichment of H3K9me2 at Sp1-responsive elements within CpGs (-170/-10) by UVB radiation repressed LEDGF transcription. Our study may contribute to understanding diseases associated with LEDGF aberrant expression due to specific epigenetic modifications, including blinding disorders.

Indexed as

CpG IslandsEpigenesis, GeneticResponse ElementsUltraviolet RaysAcetylationApoptosisEpithelium, CornealHistone Deacetylase 1HistonesHumansHydroxamic AcidsIntercellular Signaling Peptides and ProteinsMethylationMethyltransferasesPromoter Regions, GeneticReactive Oxygen SpeciesHDAC1 protein, humanHistone Deacetylase 1HistonesHydroxamic AcidsIntercellular Signaling Peptides and Proteinslens epithelium-derived growth factorMethyltransferasesReactive Oxygen SpeciesRepressor ProteinsRNA, MessengerSp1 Transcription FactorSUV39H1 protein, humantrichostatin ADNA methyltransferaseepigeneticshistone acetyltransferaseshistone deacetylaseLEDGESp1transcription

Identifiers

PMID23386123
PMCPMC3669119
OpenAlexW1972051213

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.