Evidence map›Paper›PMID 23385815›Full record

ArticleJournal of biosciences2013

Vps1 in the late endosome-to-vacuole traffic.

Jacob Hayden, Michelle Williams, Ann Granich, Hyoeun Ahn, Brandon Tenay, Joshua Lukehart, Chad Highfill, Sarah Dobard, Kyoungtae Kim

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of biosciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Jacob HaydenDepartment of Biology, Missouri State University, 901 S National, Springfield, Missouri 65807, USA.
Michelle Williams
Ann Granich
Hyoeun Ahn
Brandon Tenay
Joshua Lukehart
Chad Highfill
Sarah Dobard
Kyoungtae Kim
Missouri State University · USUniversity of Kansas · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vacuolar protein sorting 1 (Vps1), the yeast homolog to human dynamin, is a GTP hydrolyzing protein, which plays an important role in protein sorting and targeting between the Golgi and late endosomal compartments. In this study, we assessed the functional significance of Vps1 in the membrane traffic towards the vacuole. We show here that vps1 delta cells accumulated FM4-64 to a greater extent than wild-type (WT))cells, suggesting slower endocytic degradation traffic toward the vacuole. In addition, we observed that two endosome-to-vacuole traffic markers, DsRed-FYVE and Ste2-GFP, were highly accumulated in Vps1-deficient cells, further supporting Vps1's implication in efficient trafficking of endocytosed materials to the vacuole. Noteworthy, a simultaneous imaging analysis in conjunction with FM4-64 pulse-chase experiment further revealed that Vps1 plays a role in late endosome to the vacuole transport. Consistently, our subcellular localization analysis showed that Vps1 is present at the late endosome. The hyperaccumulation of endosomal intermediates in the vps1 mutant cells appears to be caused by the disruption of integrity of HOPS tethering complexes, manifested by mislocalization of Vps39 to the cytoplasm. Finally, we postulate that Vps1 functions together with the Endosomal Sorting Complex Required for Transport (ESCRT) complex at the late endosomal compartments, based on the observation that the double mutants, in which VPS1 along with singular ESCRT I, II and III genes have been disrupted, exhibited synthetic lethality. Together, we propose that Vps1 is required for correct and efficient trafficking from the late endosomal compartments to the vacuole.

Indexed as

Gene Expression Regulation, FungalAdaptor Proteins, Vesicular TransportEndocytosisEndosomal Sorting Complexes Required for TransportEndosomesFluorescent DyesGenes, ReporterGolgi ApparatusGreen Fluorescent ProteinsGTP-Binding ProteinsProtein TransportPyridinium CompoundsQuaternary Ammonium CompoundsReceptors, Mating FactorSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAdaptor Proteins, Vesicular TransportEndosomal Sorting Complexes Required for TransportFluorescent DyesFM 4-64Green Fluorescent ProteinsGTP-Binding ProteinsPyridinium CompoundsQuaternary Ammonium CompoundsReceptors, Mating FactorSaccharomyces cerevisiae ProteinsSTE2 protein, S cerevisiaeVAM6 protein, S cerevisiaeVesicular Transport ProteinsVPS1 protein, S cerevisiae

Identifiers

PMID23385815
OpenAlexW1979428225

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.