Evidence map›Paper›PMID 23385593›Full record

ArticleNature communications2013

Genome-wide profiles of CtBP link metabolism with genome stability and epithelial reprogramming in breast cancer.

Li-Jun Di, Jung S Byun, Madeline M Wong, Clay Wakano, Tara Taylor, Sven Bilke, Songjoon Baek, Kent Hunter, Howard Yang, Maxwell Lee and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature communications, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers.

0numbers the graph read from it
0cells of the map it votes in
93citing papers in PubMed
6.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

93 citing papers in PubMed, 176 citations in OpenAlex.

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  15. SIRT3 Is a Critical Regulator of Mitochondrial Function of Fibroblasts in Pulmonary Hypertension.American journal of respiratory cell and molecular biology · 2023
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33 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 1 country.

Li-Jun DiGenetics Branch, National Cancer Institute, Bethesda, Maryland 20892, USA.
Jung S Byun
Madeline M Wong
Clay Wakano
Tara Taylor
Sven Bilke
Songjoon Baek
Kent Hunter
Howard Yang
Maxwell Lee
Cecilia Zvosec
Galina Khramtsova
Fan Cheng
Charles M Perou
C Ryan Miller
Rachel Raab
Olufunmilayo I Olopade
Kevin Gardner
National Cancer Institute · USUniversity of Chicago · USUniversity of North Carolina at Chapel Hill · USEast Carolina University · US

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
Genetic Modifiers of Intitiation and Progression of Mammary CancerZIABC011255 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI HUNTER, KENT WILLIAM · 2010 to 2025
$33.2M
Molecular Profiling of Clinical SpecimensZICBC011040 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI EDELMAN, DANIEL · 2009 to 2020
$25.5M
Variation in Hormone and xenobiotic metabolizing enzyme genes and breast cancerP50CA125183 · NCI · UNIVERSITY OF CHICAGO · PI COX, NANCY · 2006 to 2010
$11.3M
Molecular linkages between epigenetic regulation and metabolism in breast cancerZIABC010847 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI GARDNER, KEVIN · 2009 to 2017
$7.7M
Intramural NIH HHS ZIA BC010847NCI NIH HHS P30 CA016086NCI NIH HHS P50 CA125183
6 · The paper itself

Abstract

The C-terminal binding protein (CtBP) is a NADH-dependent transcriptional repressor that links carbohydrate metabolism to epigenetic regulation by recruiting diverse histone-modifying complexes to chromatin. Here global profiling of CtBP in breast cancer cells reveals that it drives epithelial-to-mesenchymal transition, stem cell pathways and genome instability. CtBP expression induces mesenchymal and stem cell-like features, whereas CtBP depletion or caloric restriction reverses gene repression and increases DNA repair. Multiple members of the CtBP-targeted gene network are selectively downregulated in aggressive breast cancer subtypes. Differential expression of CtBP-targeted genes predicts poor clinical outcome in breast cancer patients, and elevated levels of CtBP in patient tumours predict shorter median survival. Finally, both CtBP promoter targeting and gene repression can be reversed by small molecule inhibition. These findings define broad roles for CtBP in breast cancer biology and suggest novel chromatin-based strategies for pharmacologic and metabolic intervention in cancer.

Indexed as

Genomic InstabilityAlcohol OxidoreductasesBinding SitesBreast NeoplasmsCaloric RestrictionCell DifferentiationCluster AnalysisDNA-Binding ProteinsDNA RepairDown-RegulationEpithelial CellsEpithelial-Mesenchymal TransitionEpitheliumFemaleGene Expression Regulation, NeoplasticGene Regulatory NetworksAlcohol OxidoreductasesC-terminal binding proteinDNA-Binding ProteinsGlucoseSmall Molecule Libraries

Identifiers

PMID23385593
PMCPMC3768144
OpenAlexW2009916814

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.