Evidence map›Paper›PMID 23383235›Full record

ArticlePloS one2013

Purification and SAXS analysis of the integrin linked kinase, PINCH, parvin (IPP) heterotrimeric complex.

Amy L Stiegler, Thomas D Grant, Joseph R Luft, David A Calderwood, Edward H Snell, Titus J Boggon

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 12 citations in OpenAlex.

  1. ILK binding to β1 integrin is indirect and mediated by kindlin-2.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Integrin-linked kinase (ILK): the known vs. the unknown and perspectives.Cellular and molecular life sciences : CMLS · 2022
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Amy L StieglerDepartment of Pharmacology, Yale University School of Medicine, New Haven, Connecticut, United States of America.
Thomas D Grant
Joseph R Luft
David A Calderwood
Edward H Snell
Titus J Boggon
Yale University · USUniversity at Buffalo, State University of New York · USHauptman-Woodward Medical Research Institute · US

Funding

Development of an Expert Crystallization Knowledge SystemR01GM088396 · NIGMS · HAUPTMAN-WOODWARD MEDICAL RESEARCH INST · PI SNELL, EDWARD H · 2010 to 2014
$1.7M
Structure and function of the integrin-linked kinase-PINCH-parvin complexR01GM088240 · NIGMS · YALE UNIVERSITY · PI BOGGON, TITUS JONATHON, CALDERWOOD, DAVID A · 2009 to 2012
$1.4M
NIGMS NIH HHS R01 GM088240NIGMS NIH HHS R01GM088240NIGMS NIH HHS R01 GM088396NIGMS NIH HHS R01GM088396
6 · The paper itself

Abstract

The heterotrimeric protein complex containing the integrin linked kinase (ILK), parvin, and PINCH proteins, termed the IPP complex, is an essential component of focal adhesions, where it interacts with many proteins to mediate signaling from integrin adhesion receptors. Here we conduct a biochemical and structural analysis of the minimal IPP complex, comprising full-length human ILK, the LIM1 domain of PINCH1, and the CH2 domain of α-parvin. We provide a detailed purification protocol for IPP and show that the purified IPP complex is stable and monodisperse in solution. Using small-angle X-ray scattering (SAXS), we also conduct the first structural characterization of IPP, which reveals an elongated shape with dimensions 120×60×40 Å. Flexibility analysis using the ensemble optimization method (EOM) is consistent with an IPP complex structure with limited flexibility, raising the possibility that inter-domain interactions exist. However, our studies suggest that the inter-domain linker in ILK is accessible and we detect no inter-domain contacts by gel filtration analysis. This study provides a structural foundation to understand the conformational restraints that govern the IPP complex.

Indexed as

Scattering, Small AngleX-Ray DiffractionAdaptor Proteins, Signal TransducingCytoskeletal ProteinsHumansLIM Domain ProteinsMembrane ProteinsModels, MolecularMultiprotein ComplexesProtein BindingProtein ConformationProtein Interaction Domains and MotifsProtein Serine-Threonine KinasesScaffold Protein ILKAdaptor Proteins, Signal TransducingCytoskeletal ProteinsIPP protein, humanLIM Domain ProteinsLIMS1 protein, humanMembrane ProteinsMultiprotein ComplexesProtein Serine-Threonine KinasesScaffold Protein ILK

Identifiers

PMID23383235
PMCPMC3561323
OpenAlexW2042832195

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.