Evidence map›Paper›PMID 23383223›Full record

ArticlePloS one2013

An agent-based model of cellular dynamics and circadian variability in human endotoxemia.

Tung T Nguyen, Steve E Calvano, Stephen F Lowry, Ioannis P Androulakis

Abstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Systems Chronotherapeutics.Pharmacological reviews · 2017
    Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. In-silico models of stem cell and developmental systems.Theoretical biology & medical modelling · 2014
    Review
  11. A Systems Engineering Perspective on Homeostasis and Disease.Frontiers in bioengineering and biotechnology · 2013
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Tung T NguyenBioMaPS Institute for Quantitative Biology, Rutgers University, Piscataway, New Jersey, United States of America.
Steve E Calvano
Stephen F Lowry
Ioannis P Androulakis

Funding

HORMONE AND CYTOKINE REGULATION OF ENDOTOXIN INJURY(RMI)R37GM034695 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI LOWRY, STEPHEN F · 1997 to 2006
$4.0M
SKELETAL MUSCLE PROTEIN RESPONSE TO INJURY AND REPLETIONR01GM034695 · NIGMS · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI CORBETT, SIOBHAN A · 1985 to 2011
$2.8M
Bioinformatics Analysis of Control Mechanisms of HypermetabolismR01GM082974 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI ANDROULAKIS, IOANNIS P · 2008 to 2011
$1.6M
NIGMS NIH HHS GM082974NIGMS NIH HHS GM34695NIGMS NIH HHS R01 GM034695NIGMS NIH HHS R01 GM082974NIGMS NIH HHS R37 GM034695
6 · The paper itself

Abstract

As cellular variability and circadian rhythmicity play critical roles in immune and inflammatory responses, we present in this study an agent-based model of human endotoxemia to examine the interplay between circadian controls, cellular variability and stochastic dynamics of inflammatory cytokines. The model is qualitatively validated by its ability to reproduce circadian dynamics of inflammatory mediators and critical inflammatory responses after endotoxin administration in vivo. Novel computational concepts are proposed to characterize the cellular variability and synchronization of inflammatory cytokines in a population of heterogeneous leukocytes. Our results suggest that there is a decrease in cell-to-cell variability of inflammatory cytokines while their synchronization is increased after endotoxin challenge. Model parameters that are responsible for IκB production stimulated by NFκB activation and for the production of anti-inflammatory cytokines have large impacts on system behaviors. Additionally, examining time-dependent systemic responses revealed that the system is least vulnerable to endotoxin in the early morning and most vulnerable around midnight. Although much remains to be explored, proposed computational concepts and the model we have pioneered will provide important insights for future investigations and extensions, especially for single-cell studies to discover how cellular variability contributes to clinical implications.

Indexed as

Models, BiologicalAlgorithmsCell SurvivalCircadian RhythmComputer SimulationCytokinesEndotoxemiaEndotoxinsHumansInflammationInflammation MediatorsTime FactorsCytokinesEndotoxinsInflammation Mediators

Identifiers

PMID23383223
PMCPMC3559552

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.