Evidence map›Paper›PMID 23383187›Full record

ArticlePloS one2013

First molecular epidemiology study of Mycobacterium tuberculosis in Kiribati.

Eman Aleksic, Matthias Merker, Helen Cox, Bereka Reiher, Zamberi Sekawi, Anna C Hearps, Claire E Ryan, Adele V Lee, Regis Goursaud, Clement Malau and 4 more

Abstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  7. Tuberculosis screening at a diabetes clinic in the Republic of the Marshall Islands.Journal of clinical tuberculosis and other mycobacterial diseases · 2016
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Eman AleksicCentre for Virology, Burnet Institute, Melbourne, Australia. eman@burnet.edu.au
Matthias Merker
Helen Cox
Bereka Reiher
Zamberi Sekawi
Anna C Hearps
Claire E Ryan
Adele V Lee
Regis Goursaud
Clement Malau
Janet O'Connor
Catherine L Cherry
Stefan Niemann
Suzanne M Crowe

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tuberculosis incidence rates in Kiribati are among the highest in the Western Pacific Region, however the genetic diversity of circulating Mycobacterium tuberculosis complex strains (MTBC) and transmission dynamics are unknown. Here, we analysed MTBC strains isolated from culture positive pulmonary tuberculosis (TB) cases from the main TB referral centre between November 2007 and October 2009. Strain genotyping (IS6110 typing, spoligotyping, 24-loci MIRU-VNTR and SNP typing) was performed and demographic information collected. Among 73 MTBC strains analysed, we identified seven phylogenetic lineages, dominated by Beijing strains (49%). Beijing strains were further differentiated in two main branches, Beijing-A (n = 8) and -B (n = 28), that show distinct genotyping patterns and are characterized by specific deletion profiles (Beijing A: only RD105, RD207 deleted; Beijing B: RD150 and RD181 additionally deleted). Many Kiribati strains (59% based on IS6110 typing of all strains) occurred in clusters, suggesting ongoing local transmission. Beijing-B strains and over-crowded living conditions were associated with strain clustering (likely recent transmission), however little evidence of anti-tuberculous drug resistance was observed. We suggest enhanced case finding amongst close contacts and continued supervised treatment of all identified cases using standard first-line drugs to reduce TB burden in Kiribati. Beijing strains can be subdivided in different principle branches that might be associated with differential spreading patterns in the population.

Indexed as

Genetic VariationPhylogenyCluster AnalysisDNA PrimersGenotypeHumansMicronesiaMinisatellite RepeatsMolecular EpidemiologyMultivariate AnalysisMycobacterium tuberculosisPolymerase Chain ReactionPolymorphism, Restriction Fragment LengthPolymorphism, Single NucleotideSpecies SpecificityStatistics, NonparametricDNA Primers

Identifiers

PMID23383187
PMCPMC3561247

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.