ArticlePhilosophical transactions of the Royal Society of London. Series B, Biological sciences2013
Graph hierarchies for phylogeography.
Article in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
- Viral Simulation Reveals Overestimation Bias in Within-Host Phylodynamic Migration Rate Estimates Under Selection.Molecular biology and evolution · 2026Article
- Phylogenetic insights into the transmission dynamics of arthropod-borne viruses.Nature reviews. Genetics · 2026Review
- Multiple introductions of equine influenza virus into the United Kingdom resulted in widespread outbreaks and lineage replacement.PLoS pathogens · 2025Article
- COVID-19 pandemic interventions reshaped the global dispersal of seasonal influenza viruses.Science (New York, N.Y.) · 2024Article
- Article
- SARS-CoV-2 European resurgence foretold: interplay of introductions and persistence by leveraging genomic and mobility data.Research square · 2021Article
- Phyloanatomic characterization of the distinct T cell and monocyte contributions to the peripheral blood HIV population within the host.Virus evolution · 2020Article
- Distinct rates and patterns of spread of the major HIV-1 subtypes in Central and East Africa.PLoS pathogens · 2019Article
- Understanding dengue virus evolution to support epidemic surveillance and counter-measure development.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2018Review
- Emerging Concepts of Data Integration in Pathogen Phylodynamics.Systematic biology · 2017Review
- Phylogenetics and Phyloanatomy of HIV/SIV Intra-Host Compartments and Reservoirs: The Key Role of the Central Nervous System.Current HIV research · 2016Review
- Inferring heterogeneous evolutionary processes through time: from sequence substitution to phylogeography.Systematic biology · 2014Article
- Predicting the emergence of H3N2 influenza viruses reveals contrasted modes of evolution of HA and NA antigens.Journal of molecular evolution · 2014Article
- Determining the phylogenetic and phylogeographic origin of highly pathogenic avian influenza (H7N3) in Mexico.PloS one · 2014Article
- Evolutionary epidemiology: preparing for an age of genomic plenty.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2013Article
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4 authors.
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Abstract
Bayesian phylogeographic methods simultaneously integrate geographical and evolutionary modelling, and have demonstrated value in assessing spatial spread patterns of measurably evolving organisms. We improve on existing phylogeographic methods by combining information from multiple phylogeographic datasets in a hierarchical setting. Consider N exchangeable datasets or strata consisting of viral sequences and locations, each evolving along its own phylogenetic tree and according to a conditionally independent geographical process. At the hierarchical level, a random graph summarizes the overall dispersion process by informing which migration rates between sampling locations are likely to be relevant in the strata. This approach provides an efficient and improved framework for analysing inherently hierarchical datasets. We first examine the evolutionary history of multiple serotypes of dengue virus in the Americas to showcase our method. Additionally, we explore an application to intrahost HIV evolution across multiple patients.
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