Evidence map›Paper›PMID 23382388›Full record

ArticleThe Journal of biological chemistry2013

Mechanism of bacterial oligosaccharyltransferase: in vitro quantification of sequon binding and catalysis.

Sabina Gerber, Christian Lizak, Gaëlle Michaud, Monika Bucher, Tamis Darbre, Markus Aebi, Jean-Louis Reymond, Kaspar P Locher

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 87 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Sabina GerberDepartment of Biology, Institute of Molecular Biology and Biophysics, Zurich, Switzerland.
Christian Lizak
Gaëlle Michaud
Monika Bucher
Tamis Darbre
Markus Aebi
Jean-Louis Reymond
Kaspar P Locher
ETH Zurich · CHUniversity of Bern · CHInstitute of Molecular Biology and Biophysics · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

N-Linked glycosylation is an essential post-translational protein modification in the eukaryotic cell. The initial transfer of an oligosaccharide from a lipid carrier onto asparagine residues within a consensus sequon is catalyzed by oligosaccharyltransferase (OST). The first X-ray structure of a complete bacterial OST enzyme, Campylobacter lari PglB, was recently determined. To understand the mechanism of PglB, we have quantified sequon binding and glycosylation turnover in vitro using purified enzyme and fluorescently labeled, synthetic peptide substrates. Using fluorescence anisotropy, we determined a dissociation constant of 1.0 μm and a strict requirement for divalent metal ions for consensus (DQNAT) sequon binding. Using in-gel fluorescence detection, we quantified exceedingly low glycosylation rates that remained undetected using in vivo assays. We found that an alanine in the -2 sequon position, converting the bacterial sequon to a eukaryotic one, resulted in strongly lowered sequon binding, with in vitro turnover reduced 50,000-fold. A threonine is preferred over serine in the +2 sequon position, reflected by a 4-fold higher affinity and a 1.2-fold higher glycosylation rate. The interaction of the +2 sequon position with PglB is modulated by isoleucine 572. Our study demonstrates an intricate interplay of peptide and metal binding as the first step of protein N-glycosylation.

Indexed as

Amino Acid SequenceCampylobacter lariCatalysisCatalytic DomainFluoresceinsFluorescence PolarizationGene Expression Regulation, BacterialGenetic Complementation TestGlycosylationHexosyltransferasesIn Vitro TechniquesIonsKineticsMembrane ProteinsModels, MolecularModels, Statistical4-carboxyfluoresceindolichyl-diphosphooligosaccharide - protein glycotransferaseFluoresceinsHexosyltransferasesIonsMembrane ProteinsPeptides

Identifiers

PMID23382388
PMCPMC3610960
OpenAlexW2103137962

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.