Evidence map›Paper›PMID 23382073›Full record

ArticleMolecular and cellular biology2013

Apurinic/apyrimidinic endonuclease 1 is the essential nuclease during immunoglobulin class switch recombination.

Shahnaz Masani, Li Han, Kefei Yu

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 104 citations in OpenAlex.

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15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Shahnaz MasaniDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, Michigan, USA.
Li Han
Kefei Yu
Michigan State University · US

Funding

Targeted DNA cleavage at switch regions in immunoglobulin class switch recombinatR01AI081817 · NIAID · MICHIGAN STATE UNIVERSITY · PI YU, KEFEI · 2009 to 2013
$1.5M
NIAID NIH HHS R01 AI081817
6 · The paper itself

Abstract

Immunoglobulin (Ig) class switch recombination (CSR) is initiated by activation-induced cytidine deaminase (AID) that catalyzes numerous DNA cytosine deaminations within switch regions. The resulting uracils are processed by uracil base excision and/or mismatch repair enzymes that ultimately generate switch region DNA double-strand breaks (DSBs). Uracil glycosylase 2 (UNG2) is required for CSR, most likely by removing uracils to generate abasic sites. Although it is presumed that the apurinic/apyrimidinic endonuclease 1 (APE1) generates DNA strand incisions (a prerequisite for CSR) at these abasic sites, a direct test of the requirement for APE1 in CSR has been difficult because of the embryonic lethality of APE1 ablation in mice. Here, we report the successful deletion of the APE1 gene in a mouse B cell line (CH12F3) capable of robust CSR in vitro. In contrast to the general assumption that APE1 is essential for cellular viability, deletion of APE1 in CH12F3 cells has no apparent effect on cell viability or growth. Moreover, CSR in APE1-null CH12F3 cells is drastically reduced, providing direct evidence for an essential role for APE1 in switch region cleavage and CSR. Finally, deletion of AP endonuclease 2 (APE2) has no effect on CSR in either APE1-proficient or -deficient cells.

Indexed as

Recombination, GeneticAnimalsB-LymphocytesCell LineCell SurvivalCytidine DeaminaseDNADNA-(Apurinic or Apyrimidinic Site) LyaseDNA Breaks, Double-StrandedEndonucleasesImmunoglobulin Class SwitchingMiceMultifunctional EnzymesUracilUracil-DNA GlycosidaseApex1 protein, mouseApex2 protein, mouseCytidine DeaminaseDNADNA-(Apurinic or Apyrimidinic Site) LyaseEndonucleasesMultifunctional EnzymesUracilUracil-DNA Glycosidase

Identifiers

PMID23382073
PMCPMC3624277
OpenAlexW2165378960

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.