Evidence map›Paper›PMID 23381944›Full record

ArticleEMBO molecular medicine2013

A human tRNA methyltransferase 9-like protein prevents tumour growth by regulating LIN9 and HIF1-α.

Ulrike Begley, Maria Soledad Sosa, Alvaro Avivar-Valderas, Ashish Patil, Lauren Endres, Yeriel Estrada, Clement T Y Chan, Dan Su, Peter C Dedon, Julio A Aguirre-Ghiso and 1 more

Open access · goldAbstract read
In one paragraph

Article in EMBO molecular medicine, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 120 citations in OpenAlex.

  1. tRNA modifications in viral replication.The Journal of biological chemistry · 2026
    Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Review
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Epigenetic reprogramming in cancer: From diagnosis to treatment.Frontiers in cell and developmental biology · 2023
    Review
  20. Article

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Ulrike BegleyCollege of Nanoscale Science and Engineering, University at Albany, State University of New York, Albany, NY, USA.
Maria Soledad Sosa
Alvaro Avivar-Valderas
Ashish Patil
Lauren Endres
Yeriel Estrada
Clement T Y Chan
Dan Su
Peter C Dedon
Julio A Aguirre-Ghiso
Thomas Begley
Icahn School of Medicine at Mount Sinai · USAlbany State University · USMassachusetts Institute of Technology · USUniversity at Albany, State University of New York · US

Funding

TOXICOLOGY CORE UNITP30ES002109 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI ENGELWARD, BEVIN P. · 1985 to 2020
$25.6M
Functional Determinants of Metastatic DormancyR01CA109182 · NCI · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI AGUIRRE-GHISO, JULIO A. · 2005 to 2025
$8.3M
Tumor microenvironments determing migration, dissemination and dormancyU54CA163131 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI AGUIRRE-GHISO, JULIO A., CASTRACANE, JAMES · 2011 to 2015
$3.9M
The Roles of Trm9 and tRNA Methylation in the DNA Damage ResponseR01ES015037 · NIEHS · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI BEGLEY, THOMAS J · 2006 to 2010
$2.4M
RNA Modifications as Biomarkers of Environmental Stress and InflammationR01ES017010 · NIEHS · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI BEGLEY, THOMAS J · 2009 to 2013
$2.1M
Translational Machinery in Stress Signaling and Tumor SuppressionR21ES017146 · NIEHS · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI AGUIRRE-GHISO, JULIO A., BEGLEY, THOMAS J · 2009 to 2010
$454k
Optimization of DNA Repair by Abh8F32ES020670 · NIEHS · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI ENDRES, LAUREN · 2012 to 2014
$187k
NCI NIH HHS R01 CA109182NCI NIH HHS U54 CA163131NIEHS NIH HHS F32 ES020670NIEHS NIH HHS P30 ES002109NIEHS NIH HHS R01 ES015037NIEHS NIH HHS R01 ES017010NIEHS NIH HHS R21 ES017146
6 · The paper itself

Abstract

Emerging evidence points to aberrant regulation of translation as a driver of cell transformation in cancer. Given the direct control of translation by tRNA modifications, tRNA modifying enzymes may function as regulators of cancer progression. Here, we show that a tRNA methyltransferase 9-like (hTRM9L/KIAA1456) mRNA is down-regulated in breast, bladder, colorectal, cervix and testicular carcinomas. In the aggressive SW620 and HCT116 colon carcinoma cell lines, hTRM9L is silenced and its re-expression and methyltransferase activity dramatically suppressed tumour growth in vivo. This growth inhibition was linked to decreased proliferation, senescence-like G0/G1-arrest and up-regulation of the RB interacting protein LIN9. Additionally, SW620 cells re-expressing hTRM9L did not respond to hypoxia via HIF1-α-dependent induction of GLUT1. Importantly, hTRM9L-negative tumours were highly sensitive to aminoglycoside antibiotics and this was associated with altered tRNA modification levels compared to antibiotic resistant hTRM9L-expressing SW620 cells. Our study links hTRM9L and tRNA modifications to inhibition of tumour growth via LIN9 and HIF1-α-dependent mechanisms. It also suggests that aminoglycoside antibiotics may be useful to treat hTRM9L-deficient tumours.

Indexed as

Genetic TherapyAnimalsAntibiotics, AntineoplasticCell HypoxiaCell ProliferationChick EmbryoColonic NeoplasmsDown-RegulationEpigenesis, GeneticG1 Phase Cell Cycle CheckpointsGene Expression Regulation, EnzymologicGene Expression Regulation, NeoplasticGlucose Transporter Type 1HCT116 CellsHT29 CellsHumansAntibiotics, AntineoplasticGlucose Transporter Type 1HIF1A protein, humanHypoxia-Inducible Factor 1, alpha SubunitLIN9 protein, humanNuclear ProteinsParomomycinRNA, MessengerSaccharomyces cerevisiae ProteinsSLC2A1 protein, humanTRM9 protein, S cerevisiaeTRMT9B protein, humantRNA MethyltransferasesTumor Suppressor Proteins

Identifiers

PMID23381944
PMCPMC3598078
OpenAlexW1923195462

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.