Evidence map›Paper›PMID 23381221›Full record

ArticleOncology reports2013

Aberrant methylation of LINE-1, SLIT2, MAL and IGFBP7 in non-small cell lung cancer.

Makoto Suzuki, Kenji Shiraishi, Ayami Eguchi, Koei Ikeda, Takeshi Mori, Kentaro Yoshimoto, Yasuomi Ohba, Tatsuya Yamada, Takaaki Ito, Yoshifumi Baba and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Oncology reports, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Hypermethylation-Mediated Silencing ofInternational journal of molecular sciences · 2022
    Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Association of Sperm Methylation atFrontiers in genetics · 2019
    Article
  19. Review
  20. DNA methylation modifications induced by hexavalent chromium.Journal of environmental science and health. Part C, Environmental carcinogenesis & ecotoxicology reviews · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Makoto SuzukiDepartment of Thoracic Surgery, Graduate School of Medical Science, Kumamoto University, Kumamoto 860-8556, Japan. smakoto@kumamoto-u.ac.jp
Kenji Shiraishi
Ayami Eguchi
Koei Ikeda
Takeshi Mori
Kentaro Yoshimoto
Yasuomi Ohba
Tatsuya Yamada
Takaaki Ito
Yoshifumi Baba
Hideo Baba
Kumamoto University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genome-wide DNA hypomethylation and gene hypermethylation play important roles in instability and carcino-genesis. Methylation in long interspersed nucleotide element 1 (LINE-1) is a good indicator of the global DNA methylation level within a cell. Slit homolog 2 (SLIT2), myelin and lymphocyte protein gene (MAL) and insulin-like growth factor binding protein 7 (IGFBP7) are known to be hypermethylated in various malignancies. The aim of the present study was to assess the precise methylation levels of LINE-1, SLIT2, MAL and IGFBP7 in non-small cell lung cancer (NSCLC) using a pyrosequencing assay. Methylation of all regions was examined in 56 primary NSCLCs using a pyrosequencing assay. Changes in mRNA expression levels of SLIT2, MAL and IGFBP7 were measured before and after treatment with a demethylating agent. Methylation of these genes was also examined in 9 lung cancer cell lines using RT-PCR and a pyrosequencing assay. Frequencies of hypomethylation of LINE-1 and hypermethylation of SLIT2, MAL and IGFBP7, defined by predetermined cut off values, were 55, 64, 46 and 54% in NSCLCs, respectively and exhibited tumor-specific features. The hypermethylation of all genes was well correlated with changes in expression. The methylation level and frequency of MAL were significantly higher in smokers and in patients without EGFR mutations. Through accurate measurement of methylation levels using pyrosequencing, hypomethylation of LINE-1 and hypermethylation of SLIT2, MAL and IGFBP7 were frequently detected in NSCLCs and associated with various clinical features. Analysis of the methylation profiles of these genes may, therefore, provide novel opportunities for the therapy of NSCLCs.

Indexed as

Carcinoma, Non-Small-Cell LungCell Transformation, NeoplasticDNA MethylationHigh-Throughput Nucleotide SequencingHumansInsulin-Like Growth Factor Binding ProteinsIntercellular Signaling Peptides and ProteinsLong Interspersed Nucleotide ElementsLung NeoplasmsMyelin and Lymphocyte-Associated Proteolipid ProteinsNerve Tissue ProteinsSlit Homolog 2 Proteininsulin-like growth factor binding protein-related protein 1Insulin-Like Growth Factor Binding ProteinsIntercellular Signaling Peptides and ProteinsMAL protein, humanMyelin and Lymphocyte-Associated Proteolipid ProteinsNerve Tissue ProteinsSlit Homolog 2 Protein

Identifiers

PMID23381221
PMCPMC3621652
OpenAlexW2167797644

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.