Evidence map›Paper›PMID 23379628›Full record

ArticleHuman genomics2013

The updated RGD Pathway Portal utilizes increased curation efficiency and provides expanded pathway information.

G Thomas Hayman, Pushkala Jayaraman, Victoria Petri, Marek Tutaj, Weisong Liu, Jeff De Pons, Melinda R Dwinell, Mary Shimoyama

Abstract read
In one paragraph

Article in Human genomics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. The Chinchilla Research Resource Database: resource for an otolaryngology disease model.Database : the journal of biological databases and curation · 2016
    Article
  3. Article
  4. Article
  5. Article
  6. The pathway ontology - updates and applications.Journal of biomedical semantics · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

G Thomas HaymanRat Genome Database, Human and Molecular Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA. gthayman@mcw.edu
Pushkala Jayaraman
Victoria Petri
Marek Tutaj
Weisong Liu
Jeff De Pons
Melinda R Dwinell
Mary Shimoyama

Funding

RAT GENOME DATABASER01HL064541 · NHLBI · MEDICAL COLLEGE OF WISCONSIN · PI ANNE E. KWITEK · 1999 to 2026
$50.0M
NHLBI NIH HHS HL64541NHLBI NIH HHS R01 HL064541
6 · The paper itself

Abstract

The RGD Pathway Portal provides pathway annotations for rat, human and mouse genes and pathway diagrams and suites, all interconnected via the pathway ontology. Diagram pages present the diagram and description, with diagram objects linked to additional resources. A newly-developed dual-functionality web application composes the diagram page. Curators input the description, diagram, references and additional pathway objects. The application combines these with tables of rat, human and mouse pathway genes, including genetic information, analysis tool and reference links, and disease, phenotype and other pathway annotations to pathway genes. The application increases the information content of diagram pages while expediting publication.

Indexed as

Genome, HumanSoftwareAnimalsComputational BiologyDatabases, GeneticGene Regulatory NetworksHumansInternetMetabolic Networks and PathwaysMiceMolecular Sequence AnnotationQuantitative Trait LociRatsReproducibility of ResultsSearch EngineSignal Transduction

Identifiers

PMID23379628
PMCPMC3598722

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.