Evidence map›Paper›PMID 23379514›Full record

ArticleJournal of medicinal chemistry2013

Small molecule antivirulents targeting the iron-regulated heme oxygenase (HemO) of P. aeruginosa.

Kellie Hom, Geoffrey A Heinzl, Suntara Eakanunkul, Pedro E M Lopes, Fengtian Xue, Alexander D MacKerell, Angela Wilks

Open access · greenAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.1field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Computational Ligand-Binding Site Prediction.Advances in experimental medicine and biology · 2026
    Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Immune Modulation by Inhibitors of the HO System.International journal of molecular sciences · 2020
    Review
  8. Metallotherapeutics development in the age of iron-clad bacteria.Metallomics : integrated biometal science · 2020
    Review
  9. Article
  10. Whole-Genome Sequences of FiveFrontiers in microbiology · 2019
    Article
  11. The Asp99-Arg188 salt bridge of the Pseudomonas aeruginosa HemO is critical in allowing conformational flexibility during catalysis.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2018
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Computer-Aided Drug Design Methods.Methods in molecular biology (Clifton, N.J.) · 2017
    Article
  17. Review
  18. Article
  19. Review
  20. Beyond Traditional Antimicrobials: AFrontiers in microbiology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Kellie HomThe Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, Maryland 21201-1140, United States.
Geoffrey A Heinzl
Suntara Eakanunkul
Pedro E M Lopes
Fengtian Xue
Alexander D MacKerell
Angela Wilks
University of Maryland, Baltimore · US

Funding

Heme utilization and homeostasis in Pseudomonas aeruginosaR01AI102883 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI WILKS, ANGELA · 2013 to 2017
$2.0M
Structure-Function of the Shigella dysenteriae heme uptake operon (shu)R01AI085535 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI WILKS, ANGELA · 2009 to 2012
$1.5M
Heme Oxygenase: Structure, Function and PathogenesisR01AI055912 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI WILKS, ANGELA · 2004 to 2008
$1.3M
Heme Oxygenase: Structure, function and pathogenesisR56AI055912 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI WILKS, ANGELA · 2009 to 2010
$600k
NIAID NIH HHS AI-55912NIAID NIH HHS AI-85535NIAID NIH HHS R01 AI055912NIAID NIH HHS R01 AI085535NIAID NIH HHS R01 AI102883NIAID NIH HHS R56 AI055912
6 · The paper itself

Abstract

Bacteria require iron for survival and virulence and employ several mechanisms including utilization of the host heme containing proteins. The final step in releasing iron is the oxidative cleavage of heme by HemO. A recent computer aided drug design (CADD) study identified several inhibitors of the bacterial HemOs. Herein we report the near complete HN, N, CO, Cα, and Cβ chemical shift assignment of the P. aeruginosa HemO in the absence and presence of inhibitors (E)-3-(4-(phenylamino)phenylcarbamoyl)acrylic acid (3) and (E)-N'-(4-(dimethylamino)benzylidene) diazenecarboximidhydrazide (5). The NMR data confirm that the inhibitors bind within the heme pocket of HemO consistent with in silico molecular dynamic simulations. Both inhibitors and the phenoxy derivative of 3 have activity against P. aeruginosa clinical isolates. Furthermore, 5 showed antimicrobial activity in the in vivo C. elegans curing assay. Thus, targeting virulence mechanisms required within the host is a viable antimicrobial strategy for the development of novel antivirulants.

Indexed as

AnimalsApoenzymesCaenorhabditis elegansDiphenylamineEnzyme InhibitorsFumaratesGuanidinesHeme Oxygenase (Decyclizing)HydrazonesModels, MolecularMolecular Docking SimulationMolecular Dynamics SimulationNuclear Magnetic Resonance, BiomolecularPseudomonas aeruginosaVirulence3-(4-(phenylamino)phenylcarbamoyl)acrylic acidApoenzymesDiphenylamineEnzyme InhibitorsFumaratesGuanidinesHeme Oxygenase (Decyclizing)HydrazonesN'-(4-(dimethylamino)benzylidene)diazenecarboximidhydrazide

Identifiers

PMID23379514
PMCPMC3643010
OpenAlexW2038857327

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.