Evidence map›Paper›PMID 23378587›Full record

ReviewCold Spring Harbor perspectives in biology2013

Okazaki fragment metabolism.

Lata Balakrishnan, Robert A Bambara

Open access · bronzeAbstract readReview
In one paragraph

Review in Cold Spring Harbor perspectives in biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 150 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Mechanistic diversity of clamp loading at small DNA gaps.The Journal of biological chemistry · 2026
    Review
  5. Article
  6. Article
  7. Article
  8. DnaE uses strand displacement synthesis during Okazaki fragment repair.bioRxiv : the preprint server for biology · 2026
    Article
  9. Review
  10. ADAR1 is an editor of DNA replication forks.Nature structural & molecular biology · 2026
    Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Dominant and genome-wide formation of DNA:RNA hybrid G-quadruplexes in living yeast cells.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Lata BalakrishnanDepartment of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY 14642, USA.
Robert A Bambara
University of Rochester Medical Center · US

Funding

ENZYMATIC MECHANISMS OF DNA SYNTHESISR01GM024441 · NIGMS · UNIVERSITY OF ROCHESTER · PI BAMBARA, ROBERT A · 1985 to 2011
$3.8M
Regulating Pathways and Fidelity of DNA Replication and Repair by AcetylationR00GM098328 · NIGMS · INDIANA UNIVERSITY INDIANAPOLIS · PI BALAKRISHNAN, LATA · 2014 to 2016
$746k
Regulating Pathways and Fidelity of DNA Replication and Repair by AcetylationK99GM098328 · NIGMS · UNIVERSITY OF ROCHESTER · PI BALAKRISHNAN, LATA · 2012 to 2013
$180k
NIGMS NIH HHS GM024441NIGMS NIH HHS GM098328NIGMS NIH HHS K99 GM098328NIGMS NIH HHS R00 GM098328NIGMS NIH HHS R01 GM024441
6 · The paper itself

Abstract

Cellular DNA replication requires efficient copying of the double-stranded chromosomal DNA. The leading strand is elongated continuously in the direction of fork opening, whereas the lagging strand is made discontinuously in the opposite direction. The lagging strand needs to be processed to form a functional DNA segment. Genetic analyses and reconstitution experiments identified proteins and multiple pathways responsible for maturation of the lagging strand. In both prokaryotes and eukaryotes the lagging-strand fragments are initiated by RNA primers, which are removed by a joining mechanism involving strand displacement of the primer into a flap, flap removal, and then ligation. Although the prokaryotic fragments are ~1200 nucleotides long, the eukaryotic fragments are much shorter, with lengths determined by nucleosome periodicity. The prokaryotic joining mechanism is simple and efficient. The eukaryotic maturation mechanism involves many enzymes, possibly three pathways, and regulation that can shift from high efficiency to high fidelity.

Indexed as

Models, GeneticDNADNA RepairDNA ReplicationEukaryotic CellsEvolution, MolecularProkaryotic CellsProtein Processing, Post-TranslationalDNAOkazaki fragments

Identifiers

PMID23378587
PMCPMC3552508
OpenAlexW2127411392

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.