Evidence map›Paper›PMID 23377542›Full record

ArticleNature structural & molecular biology2013

Trim24-repressed VL30 retrotransposons regulate gene expression by producing noncoding RNA.

Benjamin Herquel, Khalid Ouararhni, Igor Martianov, Stéphanie Le Gras, Tao Ye, Céline Keime, Thierry Lerouge, Bernard Jost, Florence Cammas, Régine Losson and 1 more

Abstract read
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In one paragraph

Article in Nature structural & molecular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 74 citations in OpenAlex.

  1. Article
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  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Harnessing endogenous transcription factors directly by small molecules for chemically induced pluripotency inception.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  10. Article
  11. TRIM proteins in hepatocellular carcinoma.Journal of biomedical science · 2022
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. The Roles of TIF1γ in Cancer.Frontiers in oncology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Benjamin HerquelDepartment of Functional Genomics and Cancer, Institut de Génétique et de Biologie Moléculaire et Cellulaire, Illkirch, France.
Khalid Ouararhni
Igor Martianov
Stéphanie Le Gras
Tao Ye
Céline Keime
Thierry Lerouge
Bernard Jost
Florence Cammas
Régine Losson
Irwin Davidson
Institut de génétique et de biologie moléculaire et cellulaire · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Trim24 (Tif1α) and Trim33 (Tif1γ) interact to form a co-repressor complex that suppresses murine hepatocellular carcinoma. Here we show that Trim24 and Trim33 cooperatively repress retinoic acid receptor-dependent activity of VL30-class endogenous retroviruses (ERVs) in liver. In Trim24-knockout hepatocytes, VL30 derepression leads to accumulation of reverse-transcribed VL30 cDNA in the cytoplasm that correlates with activation of the viral-defense interferon responses mimicking the preneoplastic inflammatory state seen in human liver following exogenous viral infection. Furthermore, upon derepression, VL30 long terminal repeats (LTRs) act as promoter and enhancer elements deregulating expression of neighboring genes and generating enhancer RNAs that are required for LTR enhancer activity in hepatocytes in vivo. These data reinforce the role of the TRIM family of proteins in retroviral restriction and antiviral defense and provide an example of an ERV-derived oncogenic regulatory network.

Indexed as

RNA, UntranslatedAnimalsCarcinoma, HepatocellularCo-Repressor ProteinsCytoplasmDNA-Binding ProteinsDNA, ComplementaryEnhancer Elements, GeneticGene Expression RegulationHepatocytesLiver NeoplasmsMiceMice, Mutant StrainsNuclear ProteinsPromoter Regions, GeneticReceptors, Retinoic AcidCo-Repressor ProteinsDNA-Binding ProteinsDNA, ComplementaryMbd1 protein, mouseNuclear ProteinsReceptors, Retinoic AcidRetroelementsRNA, Untranslatedtranscriptional intermediary factor 1Transcription FactorsTrim33 protein, mouse

Identifiers

PMID23377542
OpenAlexW2006436416

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.