Evidence map›Paper›PMID 23377457›Full record

ArticleNature nanotechnology2013

Direct detection of a BRAF mutation in total RNA from melanoma cells using cantilever arrays.

F Huber, H P Lang, N Backmann, D Rimoldi, Ch Gerber

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Article in Nature nanotechnology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
14.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 143 citations in OpenAlex.

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  5. DNA storage-from natural biology to synthetic biology.Computational and structural biotechnology journal · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

F HuberSwiss Nano Institute, University of Basel, Klingelbergstrasse 82, 4056 Basel, Switzerland. francois.huber@unibas.ch
H P Lang
N Backmann
D Rimoldi
Ch Gerber
University of Basel · CHLudwig Cancer Research · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Malignant melanoma, the deadliest form of skin cancer, is characterized by a predominant mutation in the BRAF gene. Drugs that target tumours carrying this mutation have recently entered the clinic. Accordingly, patients are routinely screened for mutations in this gene to determine whether they can benefit from this type of treatment. The current gold standard for mutation screening uses real-time polymerase chain reaction and sequencing methods. Here we show that an assay based on microcantilever arrays can detect the mutation nanomechanically without amplification in total RNA samples isolated from melanoma cells. The assay is based on a BRAF-specific oligonucleotide probe. We detected mutant BRAF at a concentration of 500 pM in a 50-fold excess of the wild-type sequence. The method was able to distinguish melanoma cells carrying the mutation from wild-type cells using as little as 20 ng µl(-1) of RNA material, without prior PCR amplification and use of labels.

Indexed as

Biosensing TechniquesCost-Benefit AnalysisDNA FragmentationGenotypeHumansMelanomaMicroarray AnalysisMutationProto-Oncogene Proteins B-rafReal-Time Polymerase Chain ReactionRNARNA, MessengerSequence Analysis, RNASkin NeoplasmsBRAF protein, humanProto-Oncogene Proteins B-rafRNARNA, Messenger

Identifiers

PMID23377457
OpenAlexW2057800132

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.