Evidence map›Paper›PMID 23376973›Full record

ArticleNature cell biology2013

A unique Oct4 interface is crucial for reprogramming to pluripotency.

Daniel Esch, Juha Vahokoski, Matthew R Groves, Vivian Pogenberg, Vlad Cojocaru, Hermann Vom Bruch, Dong Han, Hannes C A Drexler, Marcos J Araúzo-Bravo, Calista K L Ng and 3 more

Abstract read
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In one paragraph

Article in Nature cell biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 154 citations in OpenAlex.

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27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Daniel EschDepartment for Cell and Developmental Biology, Max Planck Institute for Molecular Biomedicine, Röntgenstrasse 20, Münster D-48149, Germany.
Juha Vahokoski
Matthew R Groves
Vivian Pogenberg
Vlad Cojocaru
Hermann Vom Bruch
Dong Han
Hannes C A Drexler
Marcos J Araúzo-Bravo
Calista K L Ng
Ralf Jauch
Matthias Wilmanns
Hans R Schöler
Max Planck Institute for Molecular Biomedicine · DEEuropean Molecular Biology Laboratory · DEMax Planck Society · DEGenome Institute of Singapore · SGEuropean Bioinformatics Institute · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Terminally differentiated cells can be reprogrammed to pluripotency by the forced expression of Oct4, Sox2, Klf4 and c-Myc. However, it remains unknown how this leads to the multitude of epigenetic changes observed during the reprogramming process. Interestingly, Oct4 is the only factor that cannot be replaced by other members of the same family to induce pluripotency. To understand the unique role of Oct4 in reprogramming, we determined the structure of its POU domain bound to DNA. We show that the linker between the two DNA-binding domains is structured as an α-helix and exposed to the protein's surface, in contrast to the unstructured linker of Oct1. Point mutations in this α-helix alter or abolish the reprogramming activity of Oct4, but do not affect its other fundamental properties. On the basis of mass spectrometry studies of the interactome of wild-type and mutant Oct4, we propose that the linker functions as a protein-protein interaction interface and plays a crucial role during reprogramming by recruiting key epigenetic players to Oct4 target genes. Thus, we provide molecular insights to explain how Oct4 contributes to the reprogramming process.

Indexed as

Cell DifferentiationCellular ReprogrammingAmino Acid SequenceAnimalsBlotting, WesternCells, CulturedCrystallography, X-RayDNAElectrophoretic Mobility Shift AssayEmbryonic Stem CellsEpigenesis, GeneticFibroblastsHumansKruppel-Like Factor 4LuciferasesMiceDNAKLF4 protein, humanKlf4 protein, mouseKruppel-Like Factor 4LuciferasesOctamer Transcription Factor-3Pou5f1 protein, mouseRNA, Messenger

Identifiers

PMID23376973
OpenAlexW1981059575

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.