ArticleTheoretical population biology2013
Analysis of DNA sequence variation within marine species using Beta-coalescents.
Article in Theoretical population biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
- Fixation Probabilities of Mutant Alleles in an Ecological Context.bioRxiv : the preprint server for biology · 2026Article
- GENERAL MOMENT CLOSURE FOR THE NEUTRAL TWO-LOCUS WRIGHT-FISHER DYNAMICS.bioRxiv : the preprint server for biology · 2026Article
- Article
- Inference of Coalescence Times and Variant Ages Using Convolutional Neural Networks.Molecular biology and evolution · 2023Article
- Population Genomic Evidence for a Repeated Introduction and Rapid Expansion of the Fungal Maize Pathogen Setosphaeria turcica in Europe.Genome biology and evolution · 2023Article
- Cannings models, population size changes and multiple-merger coalescents.Journal of mathematical biology · 2020Article
- Coalescent Processes with Skewed Offspring Distributions and Nonequilibrium Demography.Genetics · 2018Article
- Sweepstake evolution revealed by population-genetic analysis of copy-number alterations in single genomes of breast cancer.Royal Society open science · 2017Article
- Current hypotheses to explain genetic chaos under the sea.Current zoology · 2016Article
- On the importance of skewed offspring distributions and background selection in virus population genetics.Heredity · 2016Review
- Genetic load in marine animals: a review.Current zoology · 2016Article
- Can the site-frequency spectrum distinguish exponential population growth from multiple-merger coalescents?Genetics · 2015Article
- Article
- Statistical properties of the site-frequency spectrum associated with lambda-coalescents.Genetics · 2013Article
- An ancestral recombination graph for diploid populations with skewed offspring distribution.Genetics · 2013Article
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Authors and funding
3 authors.
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Abstract
We apply recently developed inference methods based on general coalescent processes to DNA sequence data obtained from various marine species. Several of these species are believed to exhibit so-called shallow gene genealogies, potentially due to extreme reproductive behaviour, e.g. via Hedgecock's "reproduction sweepstakes". Besides the data analysis, in particular the inference of mutation rates and the estimation of the (real) time to the most recent common ancestor, we briefly address the question whether the genealogies might be adequately described by so-called Beta-coalescents (as opposed to Kingman's coalescent), allowing multiple mergers of genealogies. The choice of the underlying coalescent model for the genealogy has drastic implications for the estimation of the above quantities, in particular the real-time embedding of the genealogy.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.