Evidence map›Paper›PMID 23375260›Full record

ArticleStructure (London, England : 1993)2013

Structural basis for autoinhibition of the guanine nucleotide exchange factor FARP2.

Xiaojing He, Yi-Chun Kuo, Tyler J Rosche, Xuewu Zhang

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Sculpting Dendritic Spines during Initiation and Maintenance of Neuropathic Pain.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2020
    Review
  9. Article
  10. Modular and Distinct Plexin-A4/FARP2/Rac1 Signaling Controls Dendrite Morphogenesis.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2020
    Article
  11. Article
  12. Rac-GEF/Rac Signaling and Metastatic Dissemination in Lung Cancer.Frontiers in cell and developmental biology · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Novel functions of CCM1 delimit the relationship of PTB/PH domains.Biochimica et biophysica acta. Proteins and proteomics · 2017
    Article
  17. Article
  18. Article
  19. The Role of Semaphorin 3A in Bone Remodeling.Frontiers in cellular neuroscience · 2017
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Xiaojing HeDepartment of Pharmacology, University of Texas Southwestern Medical Center, Dallas, TX 75063, USA.
Yi-Chun Kuo
Tyler J Rosche
Xuewu Zhang
The University of Texas Southwestern Medical Center · USDartmouth College · US

Funding

Signaling and Regulation Mechanisms of PlexinR01GM088197 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI ZHANG, XUEWU · 2009 to 2017
$2.8M
NIGMS NIH HHS 5R01GM088197NIGMS NIH HHS R01 GM088197
6 · The paper itself

Abstract

FARP2 is a Dbl-family guanine nucleotide exchange factor (GEF) that contains a 4.1, ezrin, radixin and moesin (FERM) domain, a Dbl-homology (DH) domain and two pleckstrin homology (PH) domains. FARP2 activates Rac1 or Cdc42 in response to upstream signals, thereby regulating processes such as neuronal axon guidance and bone homeostasis. How the GEF activity of FARP2 is regulated remained poorly understood. We have determined the crystal structures of the catalytic DH domain and the DH-PH-PH domains of FARP2. The structures reveal an auto-inhibited conformation in which the GEF substrate-binding site is blocked collectively by the last helix in the DH domain and the two PH domains. This conformation is stabilized by multiple interactions among the domains and two well-structured inter-domain linkers. Our cell-based activity assays confirm the suppression of the FARP2 GEF activity by these auto-inhibitory elements.

Indexed as

Adaptor Proteins, Signal TransducingAdaptor Proteins, Vesicular TransportAmino Acid SequenceAnimalsBinding SitesCrystallography, X-RayCytoskeletal ProteinsEscherichia coliGuanine Nucleotide Exchange FactorsHumansMiceMolecular Dynamics SimulationMolecular Sequence DataPhosphoproteinsProtein BindingProtein Interaction Domains and MotifsAdaptor Proteins, Signal TransducingAdaptor Proteins, Vesicular TransportCytoskeletal ProteinsFARP1 protein, humanFARP2 protein, mouseGuanine Nucleotide Exchange Factorsintersectin 1PhosphoproteinsRecombinant ProteinsRho Guanine Nucleotide Exchange Factors

Identifiers

PMID23375260
PMCPMC3595398
OpenAlexW2065057589

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.