Evidence map›Paper›PMID 23375135›Full record

ReviewSeminars in immunology2013

Human systems immunology: hypothesis-based modeling and unbiased data-driven approaches.

Arnon Arazi, William F Pendergraft, Ruy M Ribeiro, Alan S Perelson, Nir Hacohen

Abstract readReview
In one paragraph

Review in Seminars in immunology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. Mechanistic model for booster doses effectiveness in healthy, cancer, and immunosuppressed patients infected with SARS-CoV-2.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  7. Article
  8. Article
  9. Simulation modelling for immunologists.Nature reviews. Immunology · 2020
    Review
  10. Review
  11. Article
  12. Article
  13. Observational
  14. Review
  15. Solving Immunology?Trends in immunology · 2017
    Review
  16. Mathematics in modern immunology.Interface focus · 2016
    Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Arnon AraziBroad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA. Electronic address: arnonar@broadinstitute.org.
William F Pendergraft
Ruy M Ribeiro
Alan S Perelson
Nir Hacohen

Funding

UNM COBRE: THEORETICAL STUDY OF SPECIFICITY OF RNA SILENCING MECHANISMP20RR018754 · NCRR · UNIVERSITY OF NEW MEXICO · PI WEARING, HELEN JANE · 2003 to 2011
$16.7M
Center for Cell CircuitsP50HG006193 · NHGRI · BROAD INSTITUTE, INC. · PI REGEV, AVIV · 2011 to 2015
$15.6M
Gene Expression and Regulatory Networks in Human LeukocytesRC2GM093080 · NIGMS · HARVARD MEDICAL SCHOOL · PI BENOIST, CHRISTOPHE O., MATHIS, DIANE J · 2009 to 2010
$7.3M
Modeling Viral and T Lymphocyte DynamicsR01OD011095 · OD · TRIAD NATIONAL SECURITY, LLC · PI PERELSON, ALAN S · 2012 to 2024
$5.0M
Identification and validation of influenza host factors as therapeutic targetsU01AI074575 · NIAID · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI ROOT, DAVID E · 2007 to 2011
$4.6M
COBRE Center for Evolutionary and Theoretical ImmunologyP20GM103452 · NIGMS · UNIVERSITY OF NEW MEXICO · PI LOKER, ERIC SAMUEL · 2012 to 2013
$4.2M
MODELING VIRAL AND T LYMPHOCYTE DYNAMICSR01RR006555 · NCRR · UNIVERSITY OF CALIF-LOS ALAMOS NAT LAB · PI PERELSON, ALAN S · 1991 to 2011
$3.9M
Immune System Modeling/HIVR01AI028433 · NIAID · UNIVERSITY OF CALIF-LOS ALAMOS NAT LAB · PI PERELSON, ALAN S · 1990 to 2021
$3.7M
Revealing pathogen-sensing pathways using RNAi librariesDP2OD002230 · OD · MASSACHUSETTS GENERAL HOSPITAL · PI HACOHEN, NIR · 2007 to 2007
$2.6M
Immune System Modeling/HIVR37AI028433 · NIAID · UNIVERSITY OF CALIF-LOS ALAMOS NAT LAB · PI PERELSON, ALAN S · 2002 to 2011
$2.4M
In vivo validation and characterization of allelic variants in lupusF32DK097891 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI PENDERGRAFT, WILLIAM FRANKLIN · 2012 to 2013
$82k
NCRR NIH HHS P20 RR018754NCRR NIH HHS P20-RR018754NCRR NIH HHS R01 RR006555NHGRI NIH HHS P50 HG006193NIAID NIH HHS AI028433NIAID NIH HHS HHSN272201000055CNIAID NIH HHS R01 AI028433NIAID NIH HHS R37 AI028433NIAID NIH HHS U01 AI074575NIDDK NIH HHS F32 DK097891NIGMS NIH HHS GM093080NIGMS NIH HHS RC2 GM093080NIH HHS DP2 OD002230NIH HHS OD011095NIH HHS R01 OD011095
6 · The paper itself

Abstract

Systems immunology is an emerging paradigm that aims at a more systematic and quantitative understanding of the immune system. Two major approaches have been utilized to date in this field: unbiased data-driven modeling to comprehensively identify molecular and cellular components of a system and their interactions; and hypothesis-based quantitative modeling to understand the operating principles of a system by extracting a minimal set of variables and rules underlying them. In this review, we describe applications of the two approaches to the study of viral infections and autoimmune diseases in humans, and discuss possible ways by which these two approaches can synergize when applied to human immunology.

Indexed as

Allergy and ImmunologyImmune SystemSystems BiologyAutoimmune DiseasesEvidence-Based MedicineHumansModels, BiologicalVirus DiseasesAutoimmunityDynamical modelingHypothesis-based modelingSystems immunologyUnbiased data-driven approachesViral infections

Identifiers

PMID23375135
PMCPMC3836867

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.