Evidence map›Paper›PMID 23374840›Full record

ArticleUrology2013

Establishment and characterization of a new human extragonadal germ cell line, SEM-1, and its comparison with TCam-2 and JKT-1.

Sarah M Russell, Melissa G Lechner, Anusuya Mokashi, Carolina Megiel, Julie K Jang, Clive R Taylor, Leendert H J Looijenga, Christopher A French, Alan L Epstein

Open access · greenAbstract readComparative Study
In one paragraph

Article in Urology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Oncology letters · 2015
    Article
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Sarah M RussellDepartment of Pathology, University of Southern California Keck School of Medicine, Los Angeles, CA 90033, USA.
Melissa G Lechner
Anusuya Mokashi
Carolina Megiel
Julie K Jang
Clive R Taylor
Leendert H J Looijenga
Christopher A French
Alan L Epstein
University of Southern California · USBrigham and Women's Hospital · USErasmus MC · NL

Funding

USC/NORRIS COMPREHENSIVE CANCER CENTER (CORE) SUPPORTP30CA014089 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Fumito Ito · 1985 to 2026
$181.4M
Training in Genetic, Molecular and Cellular BiologyT32GM067587 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI STALLCUP, MICHAEL R · 2003 to 2012
$1.8M
NCI NIH HHS P30 CA014089NIGMS NIH HHS 3T32GM067587-07S1NIGMS NIH HHS T32 GM067587
6 · The paper itself

Abstract

objectiveTo describe the establishment and characterization of a human cell line, SEM-1, from a patient diagnosed with a mediastinal seminoma.

methodsA small percentage of germ cell tumors develop as primary lesions in extragonadal sites, and the etiology of these tumors is poorly understood. Currently, only 2 cell lines from seminoma patients have been reported, JKT-1 and TCam-2, both derived from the testis. The cell line was characterized by heterotransplantation in Nude mice, cytogenetic studies, immunohistochemical and flow cytometry staining for germ cell tumor biomarkers, quantitative reverse-transcription polymerase chain reaction for cancer testis antigen expression, and BRAF mutation screening with quantitative polymerase chain reaction.

resultsCharacterization studies confirmed the human extragonadal seminoma origin of SEM-1 and demonstrated that it had more features in common with TCam-2 than JKT-1. Specifically, SEM-1 was positive for Sal-like protein 4 (SALL-4), activator protein-2γ (AP-2γ), and cytokeratin CAM5.2, and demonstrated heterogeneous expression of stem cell markers octamer-binding transcription factor 3/4, NANOG, c-KIT, SOX17, and SOX2. Cytogenetic analysis revealed a hypotriploid chromosome number, with multiple copies of 12p, but isochromosome 12p and the BRAF mutation V600E were not identified. The cell lines also did not contain the BRD4/NUT gene rearrangement [t(15,19)] seen in midline carcinomas nor did they contain overexpressed nuclear protein in testis (NUT) genes.

conclusionSEM-1 is the first cell line derived from an extragonadal germ cell tumor showing intermediate characteristics between seminoma and nonseminoma, and as such, is an important model to study the molecular pathogenesis of this malignancy.

Indexed as

AneuploidyBiomarkersBiomarkers, TumorCell Line, TumorDNA Mutational AnalysisGene ExpressionGene RearrangementHomeodomain ProteinsHumansKeratinsMaleMiddle AgedNanog Homeobox ProteinNeoplasm ProteinsNuclear ProteinsOctamer Transcription Factor-3BiomarkersBiomarkers, TumorBRAF protein, humanCAM 5.2 antigenHomeodomain ProteinsKeratinsNanog Homeobox ProteinNANOG protein, humanNeoplasm ProteinsNuclear ProteinsNUTM1 protein, humanOctamer Transcription Factor-3Oncogene ProteinsProto-Oncogene Proteins B-rafProto-Oncogene Proteins c-kitRNA, MessengerSALL4 protein, humanSOX17 protein, humanSOX2 protein, humanSOXB1 Transcription FactorsSOXF Transcription FactorsTranscription Factor AP-2Transcription Factors

Identifiers

PMID23374840
PMCPMC4179199
OpenAlexW1986580901

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.