Evidence map›Paper›PMID 23372726›Full record

ArticlePloS one2013

A family of indoles regulate virulence and Shiga toxin production in pathogenic E. coli.

Bettina Bommarius, Akwasi Anyanful, Yevgeniy Izrayelit, Shantanu Bhatt, Emily Cartwright, Wei Wang, Alyson I Swimm, Guy M Benian, Frank C Schroeder, Daniel Kalman

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 96 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Indole signaling inGut microbes · 2025
    Review
  8. Bacterial metabolism of tryptophan causes toxicity inbioRxiv : the preprint server for biology · 2025
    Article
  9. Review
  10. The nematicidal potential ofFrontiers in plant science · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Detection of Bioactive Metabolites inApplied spectroscopy · 2022
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Bettina BommariusDepartment of Laboratory Medicine and Pathology, Emory University, Atlanta, Georgia, United States of America.
Akwasi Anyanful
Yevgeniy Izrayelit
Shantanu Bhatt
Emily Cartwright
Wei Wang
Alyson I Swimm
Guy M Benian
Frank C Schroeder
Daniel Kalman
Emory University · USCornell University · US

Funding

CHEMISTRY OF BIOLOGICAL SYSTEMST32GM008500 · NIGMS · CORNELL UNIVERSITY ITHACA · PI LIN, HENING · 1996 to 2020
$5.4M
Small Molecule Signaling in Caenorhabditis elegansR01GM088290 · NIGMS · BOYCE THOMPSON INST FOR PLANT RESEARCH · PI SCHROEDER, FRANK CLEMENS · 2010 to 2017
$2.2M
Role of tyrosine kinases in EPEC and EHEC pathogenesisR01AI056067 · NIAID · EMORY UNIVERSITY · PI KALMAN, DANIEL · 2003 to 2007
$1.6M
NIAID NIH HHS R01 AI056067NIAID NIH HHS R01-AI056067NIGMS NIH HHS R01 GM088290NIGMS NIH HHS R01-GM088290NIGMS NIH HHS T32 GM008500NIGMS NIH HHS T32GM008500PHS HHS R01-A107246201
6 · The paper itself

Abstract

Enteropathogenic Escherichia coli (EPEC), enterohemorrhagic E. coli (EHEC) and enteroaggregative E. coli (EAEC) are intestinal pathogens that cause food and water-borne disease in humans. Using biochemical methods and NMR-based comparative metabolomics in conjunction with the nematode Caenorhabditis elegans, we developed a bioassay to identify secreted small molecules produced by these pathogens. We identified indole, indole-3-carboxaldehyde (ICA), and indole-3-acetic acid (IAA), as factors that only in combination are sufficient to kill C. elegans. Importantly, although lethal to C. elegans, these molecules downregulate several bacterial processes important for pathogenesis in mammals. These include motility, biofilm formation and production of Shiga toxins. Some pathogenic E. coli strains are known to contain a Locus of Enterocyte Effacement (LEE), which encodes virulence factors that cause "attaching and effacing" (A/E) lesions in mammals, including formation of actin pedestals. We found that these indole derivatives also downregulate production of LEE virulence factors and inhibit pedestal formation on mammalian cells. Finally, upon oral administration, ICA inhibited virulence and promoted survival in a lethal mouse infection model. In summary, the C. elegans model in conjunction with metabolomics has facilitated identification of a family of indole derivatives that broadly regulate physiology in E. coli, and virulence in pathogenic strains. These molecules may enable development of new therapeutics that interfere with bacterial small-molecule signaling.

Indexed as

Adhesins, BacterialAnimalsBacterial AdhesionCaenorhabditis elegansEnterohemorrhagic Escherichia coliEnteropathogenic Escherichia coliEscherichia coliEscherichia coli InfectionsHumansIndoleacetic AcidsIndolesMiceMicrobial ViabilityShiga ToxinSurvival AnalysisVirulenceAdhesins, Bacterialindole-3-carbaldehydeindoleacetic acidIndoleacetic AcidsIndolesShiga ToxinVirulence Factors

Identifiers

PMID23372726
PMCPMC3553163
OpenAlexW2059168527

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.