Evidence map›Paper›PMID 23372674›Full record

ArticlePloS one2013

DNA methylation in the Neuropeptide S Receptor 1 (NPSR1) promoter in relation to asthma and environmental factors.

Lovisa E Reinius, Anna Gref, Annika Sääf, Nathalie Acevedo, Maaike Joerink, Maciej Kupczyk, Mauro D'Amato, Anna Bergström, Erik Melén, Annika Scheynius and 5 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Clinical epigenetics · 2018
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Selective breeding for high anxiety introduces a synonymous SNP that increases neuropeptide S receptor activity.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2015
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Epigenetics and nutritional environmental signals.Integrative and comparative biology · 2014
    Review
  17. Epigenetic regulation of asthma and allergic disease.Allergy, asthma, and clinical immunology : official journal of the Canadian Society of Allergy and Clinical Immunology · 2014
    Review
  18. Epigenetics in immune-mediated pulmonary diseases.Clinical reviews in allergy & immunology · 2013
    Review
  19. Review
  20. Asthma-snapshot or motion picture?Frontiers in genetics · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 2 countries.

Lovisa E ReiniusDepartment of Biosciences and Nutrition, Karolinska Institutet, Stockholm, Sweden.
Anna Gref
Annika Sääf
Nathalie Acevedo
Maaike Joerink
Maciej Kupczyk
Mauro D'Amato
Anna Bergström
Erik Melén
Annika Scheynius
Sven-Erik Dahlén
BIOAIR Study Group
Göran Pershagen
Cilla Söderhäll
Juha Kere
Karolinska Institutet · SEUniversity of Helsinki · FIKarolinska University Hospital · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Asthma and allergy are complex disorders influenced by both inheritance and environment, a relationship that might be further clarified by epigenetics. Neuropeptide S Receptor 1 (NPSR1) has been associated with asthma and allergy and a study suggested modulation of the genetic risk by environmental factors. We aimed to study DNA methylation in the promoter region of NPSR1 in relation to asthma and environmental exposures. Electrophoretic Mobility Shift Assay (EMSA) was used to investigate potential functional roles of both genotypes and methylation status in the NPSR1 promoter. DNA methylation was analysed using EpiTYPER in blood samples from two well-characterized cohorts; the BIOAIR study of severe asthma in adults and the Swedish birth cohort BAMSE. We observed that DNA methylation and genetic variants in the promoter influenced the binding of nuclear proteins to DNA, suggesting functional relevance. Significant, although small, differences in methylation were related to both adult severe asthma (p = 0.0001) and childhood allergic asthma (p = 0.01). Furthermore, DNA methylation was associated with exposures such as current smoking in adults for two CpG sites (p = 0.005 and 0.04), parental smoking during infancy in the children (p = 0.02) and in which month the sample was taken (p = 0.01). In summary, DNA methylation levels in the promoter of NPSR1 showed small but significant associations with asthma, both in adults and in children, and to related traits such as allergy and certain environmental exposures. Both genetic variation and the methylated state of CpG sites seem to have an effect on the binding of nuclear proteins in the regulatory region of NPSR1 suggesting complex regulation of this gene in asthma and allergy.

Indexed as

Epigenesis, GeneticPromoter Regions, GeneticAdultAsthmaChildCohort StudiesCpG IslandsDNADNA MethylationElectrophoretic Mobility Shift AssayGene-Environment InteractionHumansHypersensitivityInfantMolecular Sequence DataProtein BindingDNANPSR1 protein, humanReceptors, G-Protein-Coupled

Identifiers

PMID23372674
PMCPMC3553086
OpenAlexW2006795503

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.