Evidence map›Paper›PMID 23371951›Full record

ArticleThe Plant cell2013

Arabidopsis phytochrome B promotes SPA1 nuclear accumulation to repress photomorphogenesis under far-red light.

Xu Zheng, Suowei Wu, Huqu Zhai, Peng Zhou, Meifang Song, Liang Su, Yulin Xi, Zhiyong Li, Yingfan Cai, Fanhua Meng and 3 more

Open access · hybridAbstract read
In one paragraph

Article in The Plant cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
10.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 90 citations in OpenAlex.

  1. Review
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  6. International journal of molecular sciences · 2026
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  11. TheProceedings of the National Academy of Sciences of the United States of America · 2025
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  12. Review
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  16. Light signaling as cellular integrator of multiple environmental cues in plants.Physiology and molecular biology of plants : an international journal of functional plant biology · 2023
    Review
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Xu ZhengInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing 100081, China.
Suowei Wu
Huqu Zhai
Peng Zhou
Meifang Song
Liang Su
Yulin Xi
Zhiyong Li
Yingfan Cai
Fanhua Meng
Li Yang
Haiyang Wang
Jianping Yang
Chinese Academy of Agricultural Sciences · CNInstitute of Crop Sciences · CNCapital Normal University · CNChongqing University of Posts and Telecommunications · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phytochrome A (phyA) is the primary photoreceptor mediating deetiolation under far-red (FR) light, whereas phyB predominantly regulates light responses in red light. SUPPRESSOR OF PHYA-105 (SPA1) forms an E3 ubiquitin ligase complex with CONSTITUTIVE PHOTOMORPHOGENIC1 (COP1), which is responsible for the degradation of various photomorphogenesis-promoting factors, resulting in desensitization to light signaling. However, the role of phyB in FR light signaling and the regulatory pathway from light-activated phytochromes to the COP1-SPA1 complex are largely unknown. Here, we confirm that PHYB overexpression causes an etiolation response with reduced ELONGATED HYPOCOTYL5 (HY5) accumulation under FR light. Notably, phyB exerts its nuclear activities and promotes seedling etiolation in both the presence and absence of phyA in response to FR light. PhyB acts upstream of SPA1 and is functionally dependent on it in FR light signaling. PhyB interacts and forms a protein complex with SPA1, enhancing its nuclear accumulation under FR light. During the dark-to-FR transition, phyB is rapidly imported into the nucleus and facilitates nuclear SPA1 accumulation. These findings support the notion that phyB plays a role in repressing FR light signaling. Activity modulation of the COP1-SPA E3 complex by light-activated phytochromes is an effective and pivotal regulatory step in light signaling.

Indexed as

Light Signal TransductionActive Transport, Cell NucleusArabidopsisArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsCell Cycle ProteinsCell NucleusChlorophyllDarknessEpistasis, GeneticGene ExpressionGene Expression Regulation, PlantHypocotylLightModels, MolecularMutationArabidopsis ProteinsAT2G32950 protein, ArabidopsisBasic-Leucine Zipper Transcription FactorsCell Cycle ProteinsChlorophyllHY5 protein, ArabidopsisNuclear ProteinsPHYB protein, ArabidopsisPhytochrome BSPA1 protein, ArabidopsisUbiquitin-Protein Ligases

Identifiers

PMID23371951
PMCPMC3584529
OpenAlexW2164429889

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.