ArticleMolecular genetics and genomics : MGG2013
Genome-wide identification, phylogeny and expression analysis of SUN, OFP and YABBY gene family in tomato.
Article in Molecular genetics and genomics : MGG, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 103 papers.
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103 citing papers in PubMed, 212 citations in OpenAlex.
- Integrated genome-wide and expression analysis of YABBY genes in Triticum aestivum under PEG-induced osmotic, cold and combined stress.Journal of applied genetics · 2026Article
- CmYAB2 transcriptional module regulates fruit morphogenesis in Cucumis Melo.BMC plant biology · 2026Article
- Genome-wide characterization of OFP family in soybean reveals the roles of GmOFP genes involved in plant height regulation and salinity tolerance.BMC genomics · 2026Article
- Genome-wide identification of the YABBY gene family and functional characterization of TaYABBY4A in wheat (Triticum aestivum L.).BMC plant biology · 2025Article
- Identification of major loci governing 13 agronomic traits and the fine-mapping of CaSUN29 regulating fruit length in pepper.Molecular horticulture · 2025Article
- Genome-wide identification of the OVATE gene family of proteins in soybean and expression profiling under salt stress.Frontiers in plant science · 2025Article
- Genome-wide identification of the OVATE gene family and revelation of its expression profile and functional role in eight tissues of Rosa roxburghii Tratt.BMC plant biology · 2024Article
- A catalogue of recombination coldspots in interspecific tomato hybrids.PLoS genetics · 2024Article
- Identification and Comprehensive Analysis ofGenes · 2024Article
- The YABBY Transcription Factor, SlYABBY2a, Positively Regulates Fruit Septum Development and Ripening in Tomatoes.International journal of molecular sciences · 2024Article
- Genome-wide identification and comparative analysis of YABBY transcription factors in oil tea and tea tree.3 Biotech · 2024Article
- Morphological and Genomic Differences in the Italian Populations ofPlants (Basel, Switzerland) · 2024Article
- Identification and expression analysis ofPlant signaling & behavior · 2023Article
- BEL transcription factors in prominent Solanaceae crops: the missing pieces of the jigsaw in plant development.Planta · 2023Review
- Microtubule-associated protein SlMAP70 interacts with IQ67-domain protein SlIQD21a to regulate fruit shape in tomato.The Plant cell · 2023Article
- Article
- Molecular Mapping of Putative Genomic Regions Controlling Fruit and Seed Morphology of Watermelon.International journal of molecular sciences · 2023Article
- Nuclear phylogeny and insights into whole-genome duplications and reproductive development of Solanaceae plants.Plant communications · 2023Article
- The cotton protein GhIQD21 interacts with GhCaM7 and modulates organ morphogenesis in Arabidopsis by influencing microtubule stability.Plant cell reports · 2023Article
- Article
43 more citing papers are in PubMed but not listed here.
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Authors and funding
5 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Members of the plant-specific gene families IQD/SUN, OFP and YABBY are thought to play important roles in plant growth and development. YABBY family members are involved in lateral organ polarity and growth; OFP members encode transcriptional repressors, whereas the role of IQD/SUN members is less clear. The tomato fruit shape genes SUN, OVATE, and FASCIATED belong to IQD/SUN, OFP and the YABBY gene family, respectively. A gene duplication resulting in high expression of SUN leads to elongated fruit, whereas a premature stop codon in OVATE and a large inversion within FASCIATED control fruit elongation and a flat fruit shape, respectively. In this study, we identified 34 SlSUN, 31 SlOFP and 9 SlYABBY genes in tomato and identified their position on 12 chromosomes. Genome mapping analysis showed that the SlSUN, SlOFP, and SlYABBY genes were enriched on the top and bottom segments of several chromosomes. In particular, on chromosome 10, a cluster of SlOFPs were found to originate from tandem duplication events. We also constructed three phylogenetic trees based on the protein sequences of the IQ67, OVATE and YABBY domains, respectively, from members of these families in Arabidopsis and tomato. The closest putative orthologs of the Arabidopsis and tomato genes were determined by the position on the phylogenetic tree and sequence similarity. Furthermore, expression analysis showed that some family members exhibited tissue-specific expression, whereas others were more ubiquitously expressed. Also, certain family members overlapped with known QTLs controlling fruit shape in Solanaceous plants. Combined, these results may help elucidate the roles of SUN, OFP and YABBY family members in plant growth and development.
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