Evidence map›Paper›PMID 23369102›Full record

ArticleFEMS microbiology ecology2013

Microbial community potentially responsible for acid and metal release from an Ostrobothnian acid sulfate soil.

Xiaofen Wu, Zhen Lim Wong, Pekka Sten, Sten Engblom, Peter Osterholm, Mark Dopson

Abstract read
In one paragraph

Article in FEMS microbiology ecology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Xiaofen WuCentre for Ecology and Evolution in Microbial Model Systems, Biology and Environmental Sciences, Linnaeus University, Kalmar, Sweden.
Zhen Lim Wong
Pekka Sten
Sten Engblom
Peter Osterholm
Mark Dopson

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Soils containing an approximately equal mixture of metastable iron sulfides and pyrite occur in the boreal Ostrobothnian coastal region of Finland, termed 'potential acid sulfate soil materials'. If the iron sulfides are exposed to air, oxidation reactions result in acid and metal release to the environment that can cause severe damage. Despite that acidophilic microorganisms catalyze acid and metal release from sulfide minerals, the microbiology of acid sulfate soil (ASS) materials has been neglected. The molecular phylogeny of a depth profile through the plough and oxidized ASS layers identified several known acidophilic microorganisms and environmental clones previously identified from acid- and metal-contaminated environments. In addition, several of the 16S rRNA gene sequences were more similar to sequences previously identified from cold environments. Leaching of the metastable iron sulfides and pyrite with an ASS microbial enrichment culture incubated at low pH accelerated metal release, suggesting microorganisms capable of catalyzing metal sulfide oxidation were present. The 16S rRNA gene analysis showed the presence of species similar to Acidocella sp. and other clones identified from acid mine environments. These data support that acid and metal release from ASSs was catalyzed by indigenous microorganisms adapted to low pH.

Indexed as

Soil MicrobiologyBacteriaFinlandGenes, BacterialGenes, rRNAHydrogen-Ion ConcentrationIronMineralsOxidation-ReductionPhylogenyRNA, Ribosomal, 16SSoilSulfatesSulfidesIronMineralspyriteRNA, Ribosomal, 16SSoilSulfatesSulfides

Identifiers

PMID23369102
PMCPMC3732381

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.