Evidence map›Paper›PMID 23368961›Full record

ArticleBiochemistry2013

Mutagenesis of a specificity-determining residue in tyrosine hydroxylase establishes that the enzyme is a robust phenylalanine hydroxylase but a fragile tyrosine hydroxylase.

S Colette Daubner, Audrey Avila, Johnathan O Bailey, Dimitrios Barrera, Jaclyn Y Bermudez, David H Giles, Crystal A Khan, Noel Shaheen, Janie Womac Thompson, Jessica Vasquez and 2 more

Abstract read
In one paragraph

Article in Biochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Neural versus alternative integrative systems: molecular insights into origins of neurotransmitters.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

S Colette DaubnerDepartment of Biological Sciences, St. Mary's University, San Antonio, Texas 78228, United States. sdaubner@stmarytx.edu
Audrey Avila
Johnathan O Bailey
Dimitrios Barrera
Jaclyn Y Bermudez
David H Giles
Crystal A Khan
Noel Shaheen
Janie Womac Thompson
Jessica Vasquez
Susan P Oxley
Paul F Fitzpatrick
St. Mary's University, Texas · USTexas A&M University · USThe University of Texas Health Science Center at San Antonio · US

Funding

UNDERGRADUATE STUDENT TRAINING IN ACADEMIC RESEARCHT34GM008073 · NIGMS · ST. MARY'S UNIVERSITY · PI CONTRERAS-SHANNON, VERONICA E · 1985 to 2022
$5.7M
NEUROTRANSMITTER BIOSYNTHESISR01GM047291 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI FITZPATRICK, PAUL F. · 1992 to 2011
$3.2M
Regulation of Phenylalanine CatabolismR01GM098140 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI FITZPATRICK, PAUL F. · 2011 to 2014
$1.2M
South Texas Advanced Research Training: Undergraduate Program (START-UP)R25NS080684 · NINDS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI FRAZER, ALAN, MORILAK, DAVID A · 2012 to 2014
$741k
NIGMS NIH HHS R01 GM047291NIGMS NIH HHS R01 GM098140NIGMS NIH HHS T34 GM008073NINDS NIH HHS R25 NS080684
6 · The paper itself

Abstract

The aromatic amino acid hydroxylases tyrosine hydroxylase (TyrH) and phenylalanine hydroxylase (PheH) have essentially identical active sites; however, PheH is nearly incapable of hydroxylating tyrosine, while TyrH can readily hydroxylate both tyrosine and phenylalanine. Previous studies have indicated that Asp425 of TyrH is important in determining the substrate specificity of that enzyme [Daubner, S. C., Melendez, J., and Fitzpatrick, P. F. (2000) Biochemistry 39, 9652-9661]. Alanine-scanning mutagenesis of amino acids 423-427, a mobile loop containing Asp425, shows that only mutagenesis of Asp425 alters the activity of the enzyme significantly. Saturation mutagenesis of Asp425 results in large (up to 10(4)) decreases in the V(max) and V(max)/K(tyr) values for tyrosine hydroxylation, but only small decreases or even increases in the V(max) and V(max)/K(phe) values for phenylalanine hydroxylation. The decrease in the tyrosine hydroxylation activity of the mutant proteins is due to an uncoupling of tetrahydropterin oxidation from amino acid hydroxylation with tyrosine as the amino acid substrate. In contrast, with the exception of the D425W mutant, the extent of coupling of tetrahydropterin oxidation and amino acid hydroxylation is unaffected or increases with phenylalanine as the amino acid substrate. The decrease in the V(max) value with tyrosine as the substrate shows a negative correlation with the hydrophobicity of the amino acid residue at position 425. The results are consistent with a critical role of Asp425 being to prevent a hydrophobic interaction that results in a restricted active site in which hydroxylation of tyrosine does not occur.

Indexed as

AlanineAmino AcidsAmino Acid SubstitutionAnimalsHydroxylationModels, MolecularMutagenesis, Site-DirectedPhenylalanine HydroxylasePterinsRatsRecombinant ProteinsSubstrate SpecificityTyrosine 3-MonooxygenaseAlanineAmino AcidsPhenylalanine HydroxylasePterinsRecombinant ProteinstetrahydropterinTyrosine 3-Monooxygenase

Identifiers

PMID23368961
PMCPMC3584195
OpenAlexW2020405924

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.