Evidence map›Paper›PMID 23364696›Full record

ArticleNature2013

Identification of a candidate therapeutic autophagy-inducing peptide.

Sanae Shoji-Kawata, Rhea Sumpter, Matthew Leveno, Grant R Campbell, Zhongju Zou, Lisa Kinch, Angela D Wilkins, Qihua Sun, Kathrin Pallauf, Donna MacDuff and 14 more

Open access · greenAbstract read
In one paragraph

Article in Nature, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 481 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
481citing papers in PubMed, 1 pooled it
46.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

481 citing papers in PubMed, 1 synthesis or guideline pooled it, 751 citations in OpenAlex.

  1. Guideline
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  18. Targeting Lysosomes for Enhanced Anti-Cancer Therapeutics and Immune Response.International journal of biological sciences · 2026
    Review
  19. Review
  20. Review

421 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

24 authors at 10 institutions in 3 countries.

Sanae Shoji-KawataDepartment of Internal Medicine, UT Southwestern Medical Center, Dallas, Texas 75390, USA.
Rhea Sumpter
Matthew Leveno
Grant R Campbell
Zhongju Zou
Lisa Kinch
Angela D Wilkins
Qihua Sun
Kathrin Pallauf
Donna MacDuff
Carlos Huerta
Herbert W Virgin
J Bernd Helms
Ruud Eerland
Sharon A Tooze
Ramnik Xavier
Deborah J Lenschow
Ai Yamamoto
David King
Olivier Lichtarge
Nick V Grishin
Stephen A Spector
Dora V Kaloyanova
Beth Levine
The University of Texas Southwestern Medical Center · USUtrecht University · NLWashington University in St. Louis · USBaylor College of Medicine · USHoward Hughes Medical Institute · USRady Children's Hospital-San Diego · USSouthwestern Medical CenterCancer Research UK · GBColumbia University · USMassachusetts General Hospital · US

Funding

WRCE Nonhuman Primate CoreU54AI057156 · NIAID · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI WALKER, DAVID H · 2003 to 2013
$102.6M
Virology and Smallpox VaccinationsU54AI057160 · NIAID · WASHINGTON UNIVERSITY · PI RAY, RANJIT · 2003 to 2013
$80.9M
UT Southwestern Medical Center Simmons Comprehensive Cancer CenterP30CA142543 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI Sandi Leigh Pruitt · 2010 to 2026
$53.7M
Functional Determinnats in G Protein-coupled ReceptorsR01GM066099 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI LICHTARGE, OLIVIER · 2003 to 2022
$7.5M
Modulating selective autophagy to modify Huntington's diseaseR01NS077111 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Ai Yamamoto · 2012 to 2026
$4.3M
Comparative genomics of protein structure and functionR01GM079656 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI LICHTARGE, OLIVIER · 2007 to 2019
$4.3M
Autophagy and NeurodegenerationR01NS063973 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MELIA, THOMAS JAMES, YAMAMOTO, AI · 2008 to 2019
$3.8M
Host Genetic Factors Associated with CNS Disease of HIV-Infected ChildrenR01NS077874 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SPECTOR, STEPHEN A · 2011 to 2015
$3.6M
Protein Trafficking in Neurodegenerative DiseasesR01NS050199 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI YAMAMOTO, AI · 2004 to 2010
$3.1M
Molecular Biophysics Predoctoral Training ProgramT32GM008297 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI CHOOK, YUH MIN · 1989 to 2018
$2.4M
Computational methods for structural-functional studies of proteinsR01GM094575 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI GRISHIN, NICK V. · 2010 to 2017
$2.4M
Modulating Autophagy to Eradicate HIV-1 from CNS ReservoirsR01NS084912 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SPECTOR, STEPHEN A · 2013 to 2017
$1.9M
Cancer Research UK 15153Howard Hughes Medical InstituteNCI NIH HHS P30 CA142543NIAID NIH HHS K08 AI099150NIAID NIH HHS U54 AI057156NIAID NIH HHS U54AI057156NIAID NIH HHS U54 AI057160NIAID NIH HHS U54AI057160NIDDK NIH HHS R01 DK083756NIDDK NIH HHS R0I DK083756NIDDK NIH HHS R0I DK086502NIDDK NIH HHS RC1 DK086502NIGMS NIH HHS R01 GM066099NIGMS NIH HHS R01 GM079656NIGMS NIH HHS R01 GM094575NIGMS NIH HHS R0I GM066099NIGMS NIH HHS R0I GM079656NIGMS NIH HHS T32 GM008297NINDS NIH HHS R01 NS050199NINDS NIH HHS R01 NS063973NINDS NIH HHS R01 NS077111NINDS NIH HHS R01 NS077874NINDS NIH HHS R01 NS084912NINDS NIH HHS R0I NS063973NINDS NIH HHS R0I NS077874
6 · The paper itself

Abstract

The lysosomal degradation pathway of autophagy has a crucial role in defence against infection, neurodegenerative disorders, cancer and ageing. Accordingly, agents that induce autophagy may have broad therapeutic applications. One approach to developing such agents is to exploit autophagy manipulation strategies used by microbial virulence factors. Here we show that a peptide, Tat-beclin 1-derived from a region of the autophagy protein, beclin 1, which binds human immunodeficiency virus (HIV)-1 Nef-is a potent inducer of autophagy, and interacts with a newly identified negative regulator of autophagy, GAPR-1 (also called GLIPR2). Tat-beclin 1 decreases the accumulation of polyglutamine expansion protein aggregates and the replication of several pathogens (including HIV-1) in vitro, and reduces mortality in mice infected with chikungunya or West Nile virus. Thus, through the characterization of a domain of beclin 1 that interacts with HIV-1 Nef, we have developed an autophagy-inducing peptide that has potential efficacy in the treatment of human diseases.

Indexed as

Amino Acid SequenceAnimalsApoptosis Regulatory ProteinsAutophagyBeclin-1Cell Membrane PermeabilityCells, CulturedChikungunya virusHeLa CellsHIV-1HumansMacrophagesMembrane ProteinsMiceMolecular Sequence Datanef Gene Products, Human Immunodeficiency VirusApoptosis Regulatory ProteinsBeclin-1BECN1 protein, humanGLIPR2 protein, humanMembrane Proteinsnef Gene Products, Human Immunodeficiency Virusnef protein, Human immunodeficiency virus 1Peptide FragmentsRecombinant Fusion Proteinstat Gene Products, Human Immunodeficiency Virus

Identifiers

PMID23364696
PMCPMC3788641
OpenAlexW2161594732

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.