Evidence map›Paper›PMID 23363935›Full record

ArticleCaries research2013

Fine-mapping of 5q12.1-13.3 unveils new genetic contributors to caries.

T Shimizu, K Deeley, J Briseño-Ruiz, I M Faraco, F A Poletta, J A Brancher, G D Pecharki, E C Küchler, P N Tannure, A Lips and 15 more

Abstract read
In one paragraph

Article in Caries research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 35 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Genetic Aspects of Dental Erosive Wear and Dental Caries.International journal of dentistry · 2021
    Review
  4. Biomarkers for Lifetime Caries-Free Status.Journal of personalized medicine · 2020
    Article
  5. Article
  6. Article
  7. Article
  8. Frontiers in physiology · 2017
    Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 9 institutions in 5 countries.

T ShimizuDepartment of Pediatric Dentistry, Nihon University of Dentistry at Matsudo, Matsudo, Japan.
K Deeley
J Briseño-Ruiz
I M Faraco
F A Poletta
J A Brancher
G D Pecharki
E C Küchler
P N Tannure
A Lips
T C S Vieira
A Patir
M Yildirim
J C Mereb
J M Resick
C A Brandon
M E Cooper
F Seymen
M C Costa
J M Granjeiro
P C Trevilatto
I M Orioli
E E Castilla
M L Marazita
A R Vieira
University of Pittsburgh · USUniversidade Federal do Rio de Janeiro · BRPontifícia Universidade Católica do Paraná · BRCentro de Educación Médica e Investigaciones Clínicas Norberto Quirno · ARIstanbul University · TRUniversidade Federal Fluminense · BRInstituto Nacional de Metrologia, Qualidade e Tecnologia · BRIstanbul Medipol University · TRNihon University · JP

Funding

Extending the Phenotype of Nonsyndromic Orofacial CleftsR01DE016148 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MARAZITA, MARY L., WEINBERG, SETH M · 2004 to 2018
$19.7M
Genetics of CariesR01DE018914 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI VIEIRA, ALEXANDRE REZENDE · 2009 to 2013
$2.2M
NIDCR NIH HHS R01 DE016148NIDCR NIH HHS R01-DE016148NIDCR NIH HHS R01 DE018914
6 · The paper itself

Abstract

Caries is a multifactorial disease and little is still known about the host genetic factors influencing susceptibility. Our previous genome-wide linkage scan has identified the interval 5q12.1-5q13.3 as linked to low caries susceptibility in Filipino families. Here we fine-mapped this region in order to identify genetic contributors to caries susceptibility. Four hundred and seventy-seven subjects from 72 pedigrees with similar cultural and behavioral habits and limited access to dental care living in the Philippines were studied. DMFT scores and genotype data of 75 single-nucleotide polymorphisms were evaluated in the Filipino families with the Family-Based Association Test. For replication purposes, a total 1,467 independent subjects from five different populations were analyzed in a case-control format. In the Filipino cohort, statistically significant and borderline associations were found between low caries experience and four genes spanning 13 million base pairs (PART1, ZSWIM6, CCNB1, and BTF3). We were able to replicate these results in some of the populations studied. We detected PART1 and BTF3 expression in whole saliva, and the expression of BTF3 was associated with caries experience. Our results suggest BTF3 may have a functional role in protecting against caries.

Indexed as

Case-Control StudiesChromosome MappingChromosomes, Human, Pair 5Dental CariesDental Caries SusceptibilityDMF IndexHumansNuclear ProteinsPolymorphism, Single NucleotideSalivary Proteins and PeptidesTranscription FactorsNuclear ProteinsSalivary Proteins and Peptidestranscription factor BTF3Transcription Factors

Identifiers

PMID23363935
PMCPMC3737367
OpenAlexW2071847424

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.