Evidence map›Paper›PMID 23362379›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Genotypic recognition and spatial responses by rice roots.

Suqin Fang, Randy T Clark, Ying Zheng, Anjali S Iyer-Pascuzzi, Joshua S Weitz, Leon V Kochian, Herbert Edelsbrunner, Hong Liao, Philip N Benfey

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed.

  1. Article
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  8. Response ofPlants (Basel, Switzerland) · 2022
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  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
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  18. Review
  19. A Statistical Growth Property of Plant Root Architectures.Plant phenomics (Washington, D.C.) · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Suqin FangDepartment of Biology, Duke Center for Systems Biology, Duke University, Durham, NC 27708, USA.
Randy T Clark
Ying Zheng
Anjali S Iyer-Pascuzzi
Joshua S Weitz
Leon V Kochian
Herbert Edelsbrunner
Hong Liao
Philip N Benfey

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Root system growth and development is highly plastic and is influenced by the surrounding environment. Roots frequently grow in heterogeneous environments that include interactions from neighboring plants and physical impediments in the rhizosphere. To investigate how planting density and physical objects affect root system growth, we grew rice in a transparent gel system in close proximity with another plant or a physical object. Root systems were imaged and reconstructed in three dimensions. Root-root interaction strength was calculated using quantitative metrics that characterize the extent to which the reconstructed root systems overlap each other. Surprisingly, we found the overlap of root systems of the same genotype was significantly higher than that of root systems of different genotypes. Root systems of the same genotype tended to grow toward each other but those of different genotypes appeared to avoid each other. Shoot separation experiments excluded the possibility of aerial interactions, suggesting root communication. Staggered plantings indicated that interactions likely occur at root tips in close proximity. Recognition of obstacles also occurred through root tips, but through physical contact in a size-dependent manner. These results indicate that root systems use two different forms of communication to recognize objects and alter root architecture: root-root recognition, possibly mediated through root exudates, and root-object recognition mediated by physical contact at the root tips. This finding suggests that root tips act as local sensors that integrate rhizosphere information into global root architectural changes.

Indexed as

RhizosphereAdaptation, PhysiologicalGenotypeImage Processing, Computer-AssistedImaging, Three-DimensionalModels, BiologicalOryzaPlant Roots

Identifiers

PMID23362379
PMCPMC3574932

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.