Evidence map›Paper›PMID 23362278›Full record

ArticleThe Journal of biological chemistry2013

Testing the sulfotransferase molecular pore hypothesis.

Ian Cook, Ting Wang, Steven C Almo, Jungwook Kim, Charles N Falany, Thomas S Leyh

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Allosteres to regulate neurotransmitter sulfonation.The Journal of biological chemistry · 2019
    Article
  3. Article
  4. The NSAID allosteric site of human cytosolic sulfotransferases.The Journal of biological chemistry · 2017
    Article
  5. Article
  6. Article
  7. Controlling Sulfuryl-Transfer Biology.Cell chemical biology · 2016
    Article
  8. Design and Interpretation of Human Sulfotransferase 1A1 Assays.Drug metabolism and disposition: the biological fate of chemicals · 2016
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. The allosteric binding sites of sulfotransferase 1A1.Drug metabolism and disposition: the biological fate of chemicals · 2015
    Article
  14. Article
  15. Article
  16. High accuracy in silico sulfotransferase models.The Journal of biological chemistry · 2013
    Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Ian CookDepartment of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, New York 10461-1926.
Ting WangDepartment of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, New York 10461-1926.
Steven C AlmoDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, New York 10461-1926.
Jungwook KimDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, New York 10461-1926.
Charles N FalanyDepartment Pharmacology and Toxicology, University of Alabama School of Medicine, Birmingham, Alabama 35294-0019.
Thomas S LeyhDepartment of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, New York 10461-1926. Electronic address: tom.leyh@einstein.yu.edu.
Albert Einstein College of Medicine · USUniversity of Alabama · US

Funding

SULFATE ADENYLATION-BIOCHEMISTRY &ENZYMOLOGYR01GM054469 · NIGMS · YESHIVA UNIVERSITY · PI LEYH, THOMAS S. · 1995 to 2011
$4.7M
HUMAN CYTOSOLIC SULFOTRANSFERASESR01GM038953 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI FALANY, CHARLES N · 1992 to 2013
$3.3M
OROTATE PHOSPHORIBOSYLTRANSFERASE--STRUCTURE &MECHANISMR01GM048623 · NIGMS · TEMPLE UNIVERSITY · PI GRUBMEYER, CHARLES T. · 1992 to 2005
$2.4M
HUMAN PLATELET PHENOL SULFOTRANSFERASESR29GM038953 · NIGMS · UNIVERSITY OF ROCHESTER · PI FALANY, CHARLES N · 1987 to 1991
–
NIGMS NIH HHS GM38953NIGMS NIH HHS GM48623NIGMS NIH HHS GM54469NIGMS NIH HHS R01 GM038953NIGMS NIH HHS R01 GM048623NIGMS NIH HHS R01 GM054469
6 · The paper itself

Abstract

Human cytosolic sulfotransferases (SULTs) regulate the activities of hundreds of signaling metabolites via transfer of the sulfuryl moiety (-SO3) from activated sulfate (3'-phosphoadenosine 5'-phosphosulfate) to the hydroxyls and primary amines of xeno- and endobiotics. How SULTs select substrates from the scores of competing ligands present in a cytosolic milieu is an important issue in the field. Selectivity appears to be sterically controlled by a molecular pore that opens and closes in response to nucleotide binding. This point of view is fostered by structures showing nucleotide-dependent pore closure and the fact that nucleotide binding induces an isomerization that restricts access to the acceptor-binding pocket. Molecular dynamics models underscore the importance of pore isomerization in selectivity and predict that specific molecular linkages stabilize the closed pore in response to nucleotide binding. To test the pore model, these linkages were disrupted in SULT2A1 via mutagenesis, and the effects on selectivity were determined. The mutations uncoupled nucleotide binding from selectivity and produced enzymes that no longer discriminated between large and small substrates. The mutations did not affect the affinity or turnover of small substrates but resulted in a 183-fold gain in catalytic efficiently toward large substrates. Models predict that an 11-residue "flap" covering the acceptor-binding pocket can open and admit large substrates when nucleotide is bound; a mutant structure demonstrated that this is so. In summary, the model was shown to be a robust, accurate predictor of SULT structure and selectivity whose general features will likely apply to other members of the SULT family.

Indexed as

Models, MolecularAmino Acid SubstitutionCatalytic DomainCrystallography, X-RayDehydroepiandrosteroneHumansHydrophobic and Hydrophilic InteractionsKineticsMutagenesis, Site-DirectedProtein BindingRaloxifene HydrochlorideSulfotransferasesThermodynamicsalcohol sulfotransferaseDehydroepiandrosteroneRaloxifene HydrochlorideSulfotransferases

Identifiers

PMID23362278
PMCPMC3605680
OpenAlexW2039073844

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.