Evidence map›Paper›PMID 23361947›Full record

ArticleChemMedChem2013

Identification of a small-molecule inhibitor of HIV-1 assembly that targets the phosphatidylinositol (4,5)-bisphosphate binding site of the HIV-1 matrix protein.

Isaac Zentner, Luz-Jeannette Sierra, Ayesha K Fraser, Lina Maciunas, Marie K Mankowski, Andrei Vinnik, Peter Fedichev, Roger G Ptak, Julio Martín-García, Simon Cocklin

Open access · greenAbstract read
In one paragraph

Article in ChemMedChem, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
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  6. HIV-1 mutants expressing B cell clonogenic matrix protein p17 variants are increasing their prevalence worldwide.Proceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Isaac ZentnerDepartment of Biochemistry & Molecular Biology, Drexel University College of Medicine, 245 North 15th Street, Philadelphia, PA 19102, USA.
Luz-Jeannette Sierra
Ayesha K Fraser
Lina Maciunas
Marie K Mankowski
Andrei Vinnik
Peter Fedichev
Roger G Ptak
Julio Martín-García
Simon Cocklin
Drexel University · USRussian Quantum Center · RUSouthern Research Institute · US

Funding

Brain HIV-1 isolates/envelopes: CD4 dependence, fusogenicity and neurotoxicityR01NS065727 · NINDS · DREXEL UNIVERSITY · PI MARTIN-GARCIA, JULIO · 2009 to 2013
$2.1M
High-throughput Computational Docking Screen for Small-molecule Inhibitors of HIVR21AI087388 · NIAID · DREXEL UNIVERSITY · PI COCKLIN, SIMON · 2010 to 2011
$422k
Development of a High Throughput FRET-based screening assay for the identificatioR03AI078790 · NIAID · DREXEL UNIVERSITY · PI COCKLIN, SIMON · 2008 to 2008
$75k
NIAID NIH HHS 1R03AI078790-01A1NIAID NIH HHS 1R21AI087388-01A1NIAID NIH HHS R03 AI078790NIAID NIH HHS R21 AI087388NINDS NIH HHS R01 NS065727NINDS NIH HHS R01NS065727
6 · The paper itself

Abstract

The development of drug resistance remains a critical problem for current HIV-1 antiviral therapies, creating a need for new inhibitors of HIV-1 replication. We previously reported on a novel anti-HIV-1 compound, N(2)-(phenoxyacetyl)-N-[4-(1-piperidinylcarbonyl)benzyl]glycinamide (14), that binds to the highly conserved phosphatidylinositol (4,5)-bisphosphate (PI(4,5)P(2)) binding pocket of the HIV-1 matrix (MA) protein. In this study, we re-evaluate the hits from the virtual screen used to identify compound 14 and test them directly in an HIV-1 replication assay using primary human peripheral blood mononuclear cells. This study resulted in the identification of three new compounds with antiviral activity; 2-(4-{[3-(4-fluorophenyl)-1,2,4-oxadiazol-5-yl]methyl})-1-piperazinyl)-N-(4-methylphenyl)acetamide (7), 3-(2-ethoxyphenyl)-5-[[4-(4-nitrophenyl)piperazin-1-yl]methyl]-1,2,4-oxadiazole (17), and N-[4-ethoxy-3-(1-piperidinylsulfonyl)phenyl]-2-(imidazo[2,1-b][1,3]thiazol-6-yl)acetamide (18), with compound 7 being the most potent of these hits. Mechanistic studies on 7 demonstrated that it directly interacts with and functions through HIV-1 MA. In accordance with our drug target, compound 7 competes with PI(4,5)P(2) for MA binding and, as a result, diminishes the production of new virus. Mutation of residues within the PI(4,5)P(2) binding site of MA decreased the antiviral effect of compound 7. Additionally, compound 7 displays a broadly neutralizing anti-HIV activity, with IC(50) values of 7.5-15.6 μM for the group M isolates tested. Taken together, these results point towards a novel chemical probe that can be used to more closely study the biological role of MA and could, through further optimization, lead to a new class of anti-HIV-1 therapeutics.

Indexed as

AcetanilidesAnti-HIV AgentsBinding SitesCells, Culturedgag Gene Products, Human Immunodeficiency VirusHEK293 CellsHIV-1HIV AntigensHumansLeukocytes, MononuclearMolecular Docking SimulationOxadiazolesPhosphatidylinositol 4,5-DiphosphateRecombinant ProteinsSmall Molecule LibrariesVirus Replication2-(4-((3-(4-fluorophenyl)-1,2,4-oxadiazol-5-yl)methyl))-1-piperazinyl-N-(4-methylphenyl)acetamideAcetanilidesAnti-HIV Agentsgag Gene Products, Human Immunodeficiency VirusHIV AntigensOxadiazolesp17 protein, Human Immunodeficiency Virus Type 1Phosphatidylinositol 4,5-DiphosphateRecombinant ProteinsSmall Molecule Libraries

Identifiers

PMID23361947
PMCPMC6757327
OpenAlexW1965501423

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.